View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_59 (Length: 346)
Name: NF3726_low_59
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 45751591 - 45751921
Alignment:
| Q |
1 |
agcaaaagacaaagcatgtaagaggttataatgcacaggcaaacattataatgtgaaaacaggacagtcaacaatgcagcaatgtctttcacaagatata |
100 |
Q |
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| T |
45751591 |
agcaaaagacaaagcatgtaagaggttataatgcacatgcaaacattataatgagaaaacaggacagtcaacaatgcagcaatgtctttcacaagatata |
45751690 |
T |
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| Q |
101 |
atgcgccaccctagtactaaaacattgccattccaaaagcaaggatgaagaaacaacacaaaatttaaaaaatgtcatgtcactcacaaaacacatgtca |
200 |
Q |
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| T |
45751691 |
atgcgccaccctagtactaaaacattgccattccaaaagcaaggatgaagaaacaacacaaaatttaaaaaatgtcatgtcactcacaaaacacatgtca |
45751790 |
T |
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| Q |
201 |
tttacatgaataactattacttagcaacttatccacacagcgattcccaaagataactgtcaccgcctattaatatatgattctagatgaatatgtaagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
45751791 |
tttacatgaataactattacttagcaacttatccacacagcgtttcccaaagataactgtcaccgcctaataatatatgattctagaataatatgtaagc |
45751890 |
T |
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| Q |
301 |
cggatttatggagcaatagaaagtgtttaat |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
45751891 |
cggatttatggagcaatagaaagtgtttaat |
45751921 |
T |
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