View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_6 (Length: 609)
Name: NF3726_low_6
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 18 - 601
Target Start/End: Complemental strand, 4302161 - 4301578
Alignment:
| Q |
18 |
aggcttgacaacaaacgcttggaaaatacatcgtctgatgtttttcttgtcccacacaacctacctataatagttgcaaacgaactcacttgccgctggg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4302161 |
aggcttgacaacaaacgcttggaaaatacatcgtctggtgtttttcttgtcccacacaacctacctataatagttgcaaacgaactcacttgccgctggg |
4302062 |
T |
|
| Q |
118 |
taatcaatggattcgaacactgttttggcagctaggaacatgatgaattctgaaaattggtttgaaagaactgaaaacacatttcctttgtcttctgcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4302061 |
taatcaatggattcgaacactgttttggcagctaggaacatgatgaattctgaaaattggtttgaaagaactgaaaacacatttcctttgtcttctgcat |
4301962 |
T |
|
| Q |
218 |
tactgctgatgtgtccccccactatataaacctcatcagttacaaatttcaagggttgtgttttatcaattcctcttttctcaaatacaatcccaagtgc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4301961 |
tactgctgatgtgtccccccactatataaacctcatcagttacaaatttcaagggttgtgttttatcaattcctcttttctcaaatacaatcccaagtgc |
4301862 |
T |
|
| Q |
318 |
aataccatatcttcgaggccaatcaataactacttcactattttcaaataaataccaatgaagagacttatcgcaaataaattcatatatgataatattt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4301861 |
aataccatatcttcgaggccaatcaataactacttcactattttcaaataaataccaatgaagagacttatcgcaaataaattcatatatgataatattt |
4301762 |
T |
|
| Q |
418 |
ttattttctttgcaacagtaccccaacaacatcactatattcttgtatctagcaaaactcaagacatacacttcagaattggcttcatcaatgtcttcag |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4301761 |
ttattttctttgcaacagtaccccaacaacatcactatattcttgtatctagcaaaactcaagacatacacttcagaattggcttcatcaatgtcttcag |
4301662 |
T |
|
| Q |
518 |
aatcatctttcttggaatttgacttatgttcctttcgtgaaacataaccattggtggctttgattgatttctcaactgatgatg |
601 |
Q |
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| T |
4301661 |
aatcatctttcttggaatttgacttatgttcctttcgtgaaacataaccattggtggctttgattgatttctcaactgatgatg |
4301578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 362 - 496
Target Start/End: Complemental strand, 40668227 - 40668093
Alignment:
| Q |
362 |
caaataaataccaatgaagagacttatcgcaaataaattcatatatgataatatttttattttctttgcaacagtaccccaacaacatcactatattctt |
461 |
Q |
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||||||||| ||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
40668227 |
caaataaatgccaatgaagagacttattgcaaatatattcatatatgagaatatttttattttctttgcaacaataccccaacagcatcactatattctt |
40668128 |
T |
|
| Q |
462 |
gtatctagcaaaactcaagacatacacttcagaat |
496 |
Q |
| |
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|| ||||||||||||||||||||| || ||||||| |
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| T |
40668127 |
gtgtctagcaaaactcaagacataaacctcagaat |
40668093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 488 - 601
Target Start/End: Original strand, 33959044 - 33959157
Alignment:
| Q |
488 |
cttcagaattggcttcatcaatgtcttcagaatcatctttcttggaatttgacttatgttcctttcgtgaaacataaccattggtggctttgattgattt |
587 |
Q |
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||||||| ||||||||||| ||||||||||||||||||| ||| | |||||||||||| |||||||||||||||||||||||| | |||||||||||||| |
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| T |
33959044 |
cttcagacttggcttcatctatgtcttcagaatcatcttgctttgtatttgacttatgctcctttcgtgaaacataaccattgtttgctttgattgattt |
33959143 |
T |
|
| Q |
588 |
ctcaactgatgatg |
601 |
Q |
| |
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|||||||||||||| |
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|
| T |
33959144 |
ctcaactgatgatg |
33959157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 40668369 - 40668312
Alignment:
| Q |
305 |
caatcccaagtgcaataccatatcttcgaggccaatcaataactacttcactattttc |
362 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||| |||| ||||||||||||| |
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|
| T |
40668369 |
caatcccaagtgcaataccatatctttgagaccaatcaagaactgcttcactattttc |
40668312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 49112454 - 49112546
Alignment:
| Q |
149 |
ctaggaacatgatgaattctgaaaattggtttgaaagaactgaaaacacatttcctttgtcttctgcattactgctgatgtgtccccccacta |
241 |
Q |
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||||||||||| ||||||||| | ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49112454 |
ctaggaacatgttgaattctgcatattggttagaaggaactgaaaacacatttcctttgtcttctgcattactgctgatgtgcccccccacta |
49112546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 49100660 - 49100762
Alignment:
| Q |
149 |
ctaggaacatgatgaattctgaaaattggtttgaaagaactgaaaacacatttcctttgtcttctgcattactgctgatgtgtccccccactatataaac |
248 |
Q |
| |
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||||||||||| ||||||||| | ||||||||||| | |||||||| ||||||||||||||||||| ||| |||||||||||||| ||||||| |||||| |
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| T |
49100660 |
ctaggaacatgttgaattctgcatattggtttgaagggactgaaaaaacatttcctttgtcttctgtattcctgctgatgtgtcctcccactacataaac |
49100759 |
T |
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| Q |
249 |
ctc |
251 |
Q |
| |
|
||| |
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|
| T |
49100760 |
ctc |
49100762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 49112291 - 49112401
Alignment:
| Q |
18 |
aggcttgacaacaaacgcttggaaaatacatcgtctgatgtttttcttgtcccacacaacctacctataatagttgcaaacgaactcacttgccgctggg |
117 |
Q |
| |
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||||||||||| | || ||||| ||| ||| | |||||||||||||||||||| || |||||||||||||||||||| ||||||||||| ||||| | |
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| T |
49112291 |
aggcttgacaatagactcttggtaaacacaacctctgatgtttttcttgtcccttctaatctacctataatagttgcaaatgaactcacttggcgctgag |
49112390 |
T |
|
| Q |
118 |
taatcaatgga |
128 |
Q |
| |
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| |||||||| |
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|
| T |
49112391 |
tgctcaatgga |
49112401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 49100497 - 49100586
Alignment:
| Q |
18 |
aggcttgacaacaaacgcttggaaaatacatcgtctgatgtttttcttgtcccacacaacctacctataatagttgcaaacgaactcact |
107 |
Q |
| |
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||||||||||||| ||||||||||||| || | |||| ||||||||||||||| || ||||||||||| ||||||||| |||||||| |
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| T |
49100497 |
aggcttgacaacagacgcttggaaaatgcaacctctggtgtttttcttgtcccgtgcagcctacctataaacgttgcaaacaaactcact |
49100586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 5085423 - 5085365
Alignment:
| Q |
248 |
cctcatcagttacaaatttcaagggttgtgttttatcaattcctcttttctcaaataca |
306 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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|
| T |
5085423 |
cctcatcagttacaaatttcaagggttgtgtttcatcaattcctcttttctcgaataca |
5085365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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