View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_60 (Length: 343)
Name: NF3726_low_60
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 52808795 - 52808492
Alignment:
| Q |
1 |
ggtgaattaaaatatctaaactatgaatctgctattttgttttagtgtttgatttgacaacatttttcaatgatctatcgaacaactaatatatccttaa |
100 |
Q |
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| T |
52808795 |
ggtgaattaaaatatctaaactatgaatctgctattttgtttgtgtgtttgatttgagaacacttttcaatgatctatcgaacaattaatatatccttaa |
52808696 |
T |
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| Q |
101 |
atttataacccctaaccataaaataatcgtcatatgtaataataactattttaatatggtaattccttcaacaac-nnnnnnnctaatttatatcggaaa |
199 |
Q |
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| T |
52808695 |
atttataacccctaaccataaaataaccgtcatatgtaataataactattttaatacggtaattccttcaacaacaaaaaaaactattttatatcggaaa |
52808596 |
T |
|
| Q |
200 |
atactgaatgactctaattttcacatgtcttattattccacaaggcaatcgtgactttaatgaactataatttttcaaaccaaatgaatttatatgatga |
299 |
Q |
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||||||||||||||||||||||| |||||||||||| |||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52808595 |
atactgaatgactctaattttcatatgtcttattatcccacaaggcaattgtgac---aatgaactataattttttaaaccaaatgaatttatatgatga |
52808499 |
T |
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| Q |
300 |
aaataca |
306 |
Q |
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||||||| |
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| T |
52808498 |
aaataca |
52808492 |
T |
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