View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3726_low_62 (Length: 331)

Name: NF3726_low_62
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3726_low_62
NF3726_low_62
[»] chr2 (2 HSPs)
chr2 (45-314)||(41249569-41249839)
chr2 (1-37)||(40027659-40027695)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-37)||(64824-64860)
[»] chr3 (2 HSPs)
chr3 (1-39)||(41046688-41046726)
chr3 (1-30)||(32534956-32534985)
[»] chr8 (2 HSPs)
chr8 (1-34)||(13225158-13225191)
chr8 (1-29)||(33328156-33328184)
[»] chr7 (2 HSPs)
chr7 (1-34)||(4641433-4641466)
chr7 (1-30)||(29100370-29100399)
[»] chr4 (1 HSPs)
chr4 (1-29)||(18751597-18751625)
[»] chr1 (1 HSPs)
chr1 (1-29)||(5963097-5963125)


Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 45 - 314
Target Start/End: Complemental strand, 41249839 - 41249569
Alignment:
Q  45 tctcgccttatgttatgagcattttcctacttcctatcacacttaatgatgatattgagaagatgatttattcattttcgtgggatcatggagggactgc 144  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41249839 tctcgccttatgttatgagcattatcctacttcctatcacacttaatgatgatattgagaagatgatttattcattttcgtgggatgatggagggactgc 41249740  T
Q  145 tcgtagaggaattcactggttgtcatgggatacgcttattgtacaca-aaaaattaggtatgggatttaaggatttgagggcctttgatttggcggtgct 243  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  41249739 tcgtagaggaattcactggttgtcttgggatacgcttattgtacacacaaaagttaggtatgggatttaaggatttgacggcctttgatttggcggtgct 41249640  T
Q  244 gggaaagaaaggttagaagtttcagacacaagcaggatgcttggtatcacagttatttaaagcgcgttact 314  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  41249639 gggaaagaaaggttagaagtttcagacacaaccaggatgtttggtatcacagttatttaaagcgcgttact 41249569  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40027659 - 40027695
Alignment:
Q  1 cacgaggaccaaaagtgtaattaaacctttaattaat 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  40027659 cacgaggaccaaaagtgtaattaaacctttatttaat 40027695  T

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Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 64824 - 64860
Alignment:
Q  1 cacgaggaccaaaagtgtaattaaacctttaattaat 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  64824 cacgaggaccaaaagtgtaattaaacctttaattaat 64860  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 41046726 - 41046688
Alignment:
Q  1 cacgaggaccaaaagtgtaattaaacctttaattaatga 39  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  41046726 cacgaggaccaaaagtgtaattaaaccattaataaatga 41046688  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 32534985 - 32534956
Alignment:
Q  1 cacgaggaccaaaagtgtaattaaaccttt 30  Q
    ||||||||||||||||||||||||||||||    
T  32534985 cacgaggaccaaaagtgtaattaaaccttt 32534956  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 13225158 - 13225191
Alignment:
Q  1 cacgaggaccaaaagtgtaattaaacctttaatt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  13225158 cacgaggaccaaaagtgtaattaagcctttaatt 13225191  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 33328184 - 33328156
Alignment:
Q  1 cacgaggaccaaaagtgtaattaaacctt 29  Q
    |||||||||||||||||||||||||||||    
T  33328184 cacgaggaccaaaagtgtaattaaacctt 33328156  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 4641466 - 4641433
Alignment:
Q  1 cacgaggaccaaaagtgtaattaaacctttaatt 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  4641466 cacgaggaccaaaagtgtaattaaaccttgaatt 4641433  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 29100370 - 29100399
Alignment:
Q  1 cacgaggaccaaaagtgtaattaaaccttt 30  Q
    ||||||||||||||||||||||||||||||    
T  29100370 cacgaggaccaaaagtgtaattaaaccttt 29100399  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 18751625 - 18751597
Alignment:
Q  1 cacgaggaccaaaagtgtaattaaacctt 29  Q
    |||||||||||||||||||||||||||||    
T  18751625 cacgaggaccaaaagtgtaattaaacctt 18751597  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 5963097 - 5963125
Alignment:
Q  1 cacgaggaccaaaagtgtaattaaacctt 29  Q
    |||||||||||||||||||||||||||||    
T  5963097 cacgaggaccaaaagtgtaattaaacctt 5963125  T

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