View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3726_low_63 (Length: 327)

Name: NF3726_low_63
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3726_low_63
NF3726_low_63
[»] chr1 (2 HSPs)
chr1 (72-314)||(3717494-3717742)
chr1 (1-60)||(35883521-35883580)
[»] chr5 (3 HSPs)
chr5 (1-73)||(2629918-2629990)
chr5 (1-66)||(15022145-15022210)
chr5 (1-68)||(34674954-34675021)
[»] chr7 (1 HSPs)
chr7 (6-73)||(8352878-8352945)
[»] chr4 (1 HSPs)
chr4 (28-73)||(52378941-52378986)
[»] chr2 (1 HSPs)
chr2 (28-60)||(28544148-28544180)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 72 - 314
Target Start/End: Complemental strand, 3717742 - 3717494
Alignment:
Q  72 tttattgtttgtcttcacaactcgccaaaaaa-tacatgttatctttcttcgacatcataaactatagctatacat-----catatgatgaaactttgct 165  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||    
T  3717742 tttattgtttgtcttcacaactcgtcaaaaaaatacatgttatctttcttcgacatcataaactatagctatacattacatcatatgatgaaactttgct 3717643  T
Q  166 caaagttcttgtcctctatccacaaactccatcagtgaaatccatggggaataaattctcacaaaatctctgtgaatgccctggtatcccacgaaagaag 265  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3717642 caaagttcttgtcctctatccacaaactccatcatcgaaatccatggggaataaattctcacaaaatctcagtgaatgccctggtatcccacgaaagaag 3717543  T
Q  266 catatggtacaaactcatagtgaaaaatgagaacaccacactcacctct 314  Q
    ||||  |||| ||||||||||||||||||||||||||||||||||||||    
T  3717542 catagagtaccaactcatagtgaaaaatgagaacaccacactcacctct 3717494  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 35883580 - 35883521
Alignment:
Q  1 ctctattgattttgtccaatnnnnnnngagaaaaagtggttgtcactaaagttgtacaaa 60  Q
    ||||||||||||||||||||       ||||||||||||||||||| || ||||||||||    
T  35883580 ctctattgattttgtccaataaaaagagagaaaaagtggttgtcacaaaggttgtacaaa 35883521  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 2629918 - 2629990
Alignment:
Q  1 ctctattgattttgtccaatnnnnnnngagaaaaagtggttgtcactaaagttgtacaaatatcactcttctt 73  Q
    |||||||| |||||||||||       ||||||||||| ||||||| || |||||||||||||||||||||||    
T  2629918 ctctattgtttttgtccaataaaaatagagaaaaagtgattgtcacaaaggttgtacaaatatcactcttctt 2629990  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 15022210 - 15022145
Alignment:
Q  1 ctctattgattttgtccaatnnnnnnngagaaaaagtggttgtcactaaagttgtacaaatatcac 66  Q
    |||||||| |||||||||||       ||||||||||||||||||| || ||||||||||||||||    
T  15022210 ctctattgtttttgtccaataaaaatagagaaaaagtggttgtcacaaaggttgtacaaatatcac 15022145  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 34674954 - 34675021
Alignment:
Q  1 ctctattgattttgtccaatnnnnnnngagaaaaagtggttgtcactaaagttgtacaaatatcactc 68  Q
    ||||||||||||||||||||       ||||||||||| ||||||  ||||||||| |||||||||||    
T  34674954 ctctattgattttgtccaataaaaagagagaaaaagtgattgtcataaaagttgtataaatatcactc 34675021  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 8352878 - 8352945
Alignment:
Q  6 ttgattttgtccaatnnnnnnngagaaaaagtggttgtcactaaagttgtacaaatatcactcttctt 73  Q
    |||||||||||||||       ||||||||||||||||||| || |||||||||||||||||| ||||    
T  8352878 ttgattttgtccaataagaagagagaaaaagtggttgtcacaaaggttgtacaaatatcactcatctt 8352945  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 52378986 - 52378941
Alignment:
Q  28 gagaaaaagtggttgtcactaaagttgtacaaatatcactcttctt 73  Q
    ||||||||||||||||||| ||||||||||||||| ||||| ||||    
T  52378986 gagaaaaagtggttgtcacaaaagttgtacaaataccactcctctt 52378941  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 28544148 - 28544180
Alignment:
Q  28 gagaaaaagtggttgtcactaaagttgtacaaa 60  Q
    ||||||||||||||||||| |||||||||||||    
T  28544148 gagaaaaagtggttgtcacaaaagttgtacaaa 28544180  T

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