View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_65 (Length: 321)
Name: NF3726_low_65
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 69 - 305
Target Start/End: Original strand, 4976687 - 4976923
Alignment:
| Q |
69 |
gattaaaaacttaatggcttcacatgccacatcaatttcttgggaaatcgttttagacgtcagcttgtgactcttacaagtgcaagcatgacagcaacat |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4976687 |
gattaaaaacttaatggcttcacatgccacatcaatttcttgggaaatagttttagacgtcagcttgtgactcttacaagtgcaagcatgacagcaacat |
4976786 |
T |
|
| Q |
169 |
atcttactcttgaatatgagttaacacctcnnnnnnngaaatggatatttgtctcataatataaatcttgcgtgtaagatgaaatcatccattacgtacc |
268 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4976787 |
atcttactcttgaatatgagttaacacctctttttttgaaatggatatttgtctcataatataaatcttgcgtgtaagatgaaatcatccattacgtacc |
4976886 |
T |
|
| Q |
269 |
cttctcttgtatcacgttttctcactgtttatgtttg |
305 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
4976887 |
cttctcttgtgtcacgttttctcactgtttatgtttg |
4976923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 69 - 305
Target Start/End: Original strand, 4994594 - 4994830
Alignment:
| Q |
69 |
gattaaaaacttaatggcttcacatgccacatcaatttcttgggaaatcgttttagacgtcagcttgtgactcttacaagtgcaagcatgacagcaacat |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4994594 |
gattaaaaacttaatggcttcacatgccacatcaatttcttgggaaatagttttagacgtcagcttgtgactcttacaagtgcaagcatgacagcaacat |
4994693 |
T |
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| Q |
169 |
atcttactcttgaatatgagttaacacctcnnnnnnngaaatggatatttgtctcataatataaatcttgcgtgtaagatgaaatcatccattacgtacc |
268 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4994694 |
atcttactcttgaatatgagttaacacctctttttttgaaatggatatttgtctcataatataaatcttgcgtgtaagatgaaatcatccattacgtacc |
4994793 |
T |
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| Q |
269 |
cttctcttgtatcacgttttctcactgtttatgtttg |
305 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
4994794 |
cttctcttgtgtcacgttttctcactgtttatgtttg |
4994830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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