View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_66 (Length: 320)
Name: NF3726_low_66
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 1753934 - 1754034
Alignment:
| Q |
200 |
tcaaattctttgataacaaaattgtttttcgtttgttgtgaaatatctgtcactttgttttatacttttgcaaataaacatgttacaatatctgtgcata |
299 |
Q |
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| T |
1753934 |
tcaaattctttgataacaaaattgtttttcgtttgttgtgaaatatctgtcactttgttttatacttttgcaaataaacatgttacaatatctgtgcata |
1754033 |
T |
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| Q |
300 |
a |
300 |
Q |
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| T |
1754034 |
a |
1754034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 1753787 - 1753847
Alignment:
| Q |
143 |
tgttcagtttagacataattattggataagaatttagatagcaaagacatggtttcttcaa |
203 |
Q |
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| T |
1753787 |
tgttcagtttagacataattattggataagaatttagatagcaaaaacatggtttcttcaa |
1753847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 1753710 - 1753763
Alignment:
| Q |
80 |
taatatttctacatttctcatcaaaagtgtcatatatttacaacttcacaagtc |
133 |
Q |
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| T |
1753710 |
taatatttctacatttctcatgaaaagtgtcatatatttacaacttcacaagtc |
1753763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 1753519 - 1753551
Alignment:
| Q |
19 |
agcatgtgtgaatttgttacagatttcttatat |
51 |
Q |
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| T |
1753519 |
agcatgtgtgaatttgttacagatttcttatat |
1753551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 27504217 - 27504164
Alignment:
| Q |
80 |
taatatttctacatttctcatcaaaagtgtcatatatttacaacttcacaagtc |
133 |
Q |
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| T |
27504217 |
taatatttctccatttctcatgaaaagtgtcatatatttacaacttcacaagtc |
27504164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 27478715 - 27478768
Alignment:
| Q |
80 |
taatatttctacatttctcatcaaaagtgtcatatatttacaacttcacaagtc |
133 |
Q |
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| T |
27478715 |
taatatttctccatttctcatgaaaagtgtcataaatttacaacttcacaagtc |
27478768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 27509150 - 27509106
Alignment:
| Q |
80 |
taatatttctacatttctcatcaaaagtgtcatatatttacaact |
124 |
Q |
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| T |
27509150 |
taatatttctccatttctcatgaaaagtgtcatatatttacaact |
27509106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 27475422 - 27475464
Alignment:
| Q |
91 |
catttctcatcaaaagtgtcatatatttacaacttcacaagtc |
133 |
Q |
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| T |
27475422 |
catttctcatgaaaagagtcatatatttacaacttcacaagtc |
27475464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 27522986 - 27522947
Alignment:
| Q |
159 |
aattattggataagaatttagatagcaaagacatggtttct |
199 |
Q |
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| T |
27522986 |
aattattggata-gaatttagatagcaaaaacatggtttct |
27522947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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