View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3726_low_67 (Length: 319)
Name: NF3726_low_67
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_67 |
 | |
|
| [»] scaffold0667 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 11422273 - 11422567
Alignment:
| Q |
18 |
gtcccagaaattcttaggaatttccctagttcttctttctttcctgggaatgctaagttacattttccgaatagtcctcctggatcaacggtttcaccta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11422273 |
gtcccagaaattcttaggaatttccctagttcttctttctttcctgggaatgctaagttacattttccgaatagtcctcctggatcaacggtttcaccta |
11422372 |
T |
|
| Q |
118 |
ccaaaagttccaaggggaagtctatgtccacagctgttaaagtaataatcatagtctcatgtgtggttgctcttttcatattaatcttactggctgtctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11422373 |
ccaaaagttccaaggggaagtctatgtccacagctgttaaagtaataatcatagtctcatgtgtggttgctcttttcatattaatcttactggctgtctt |
11422472 |
T |
|
| Q |
218 |
catacattacatacgtatgtcgcgatcttctacatcagaatatgatacagctactggtaaggatacccgcggtcgccctcaaccagttatctctg |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11422473 |
catacattacatacgtatgtcgcgatcttctacatcagaatatgatacagctactggtaaggatacccgcggtcgccctcaaccagttatctctg |
11422567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 21 - 168
Target Start/End: Complemental strand, 9324942 - 9324796
Alignment:
| Q |
21 |
ccagaaattcttaggaatttccctagttcttctttctttcctgggaatgctaagttacattttccgaatagtcctcctggatcaacggtttcacctacca |
120 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||| ||||||||||||| |
|
|
| T |
9324942 |
ccagaaattcttagaaagatccctagttcttctttctttcctgggaatgctaagttacattttccaaatagtcata-tggatcaatcgtttcacctacca |
9324844 |
T |
|
| Q |
121 |
aaagttccaaggggaagtctatgtccacagctgttaaagtaataatca |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9324843 |
aaagttccaaggggaagtctatgtccacagctgttaaagtaacaatca |
9324796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 147 - 263
Target Start/End: Complemental strand, 6286 - 6170
Alignment:
| Q |
147 |
acagctgttaaagtaataatcatagtctcatgtgtggttgctcttttcatattaatcttactggctgtcttcatacattacatacgtatgtcgcgatctt |
246 |
Q |
| |
|
|||| |||||||||||||||||||| |||| || ||||||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||||| ||| |
|
|
| T |
6286 |
acaggtgttaaagtaataatcatagcctcacgtatggttgctcttttcatattaatcttaccggttgttttcatacattacacacgtatgtcgcgagctt |
6187 |
T |
|
| Q |
247 |
ctacatcagaatatgat |
263 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
6186 |
ctacatcagaatatgat |
6170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 6392 - 6306
Alignment:
| Q |
64 |
ggaatgctaagttacattttccgaatagtcctcctggatcaacggtttcacctaccaaaagttccaaggggaagtctatgtccacag |
150 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||| |||||||||||| |||||||||| |||||||||||||| |||| |
|
|
| T |
6392 |
ggaatgctaagttacattttccaaatagtcctccccgatcaaccgtttcacctaccgaaagttccaacgggaagtctatgtctacag |
6306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University