View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_7 (Length: 604)
Name: NF3726_low_7
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 342 - 589
Target Start/End: Complemental strand, 1956853 - 1956606
Alignment:
| Q |
342 |
tttttaccttgatgccatgataaggaatatcacaaaagatgtctcactaattgcaaaaccctttatcttcttctctgccatgagacctactagtgtatca |
441 |
Q |
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| T |
1956853 |
tttttacctagatgccatgataaggaatatcacaaaagatgtctcactaattgcaaaaccctttatcttcttctctgccatgagaccaactagtgtatca |
1956754 |
T |
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| Q |
442 |
agctcctcaacatcattcccatatacctcttccaatactttgattacttccttatcatctgtcaaatcttcccattttgaaataggtatcaatagtaatg |
541 |
Q |
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| T |
1956753 |
agctcctcaacatcatttccatatacctcttccaatactttgattacttccttatcatctgtcaaatcttcccattttgaaataggtatcattaataatg |
1956654 |
T |
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| Q |
542 |
ctcttctgaattggttatatctggctactttcctctctctatccctat |
589 |
Q |
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| T |
1956653 |
atcttctgaattggttatatttggctactttcctctctctatccctat |
1956606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 294 - 587
Target Start/End: Complemental strand, 1927701 - 1927407
Alignment:
| Q |
294 |
aatattatgaaggtataaacataaataaaacaaaacaagttttagt-attttttaccttgatgccatgataaggaatatcacaaaagatgtctcactaat |
392 |
Q |
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| T |
1927701 |
aatattatgaaggtaaaaacatcaataaaataaaataattgtaatttattttttacctagatgccatgagaagaaatattgtaaaagctgtttcacttat |
1927602 |
T |
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| Q |
393 |
tgcaaaaccctttatcttcttctctgccatgagacctactagtgtatcaagctcctcaacatcattcccatatacctcttccaatactttgattacttcc |
492 |
Q |
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| T |
1927601 |
tgcaaaaccctttatcttcttctctgccattagacctacttgtacatcaagctcctcaatatcatctccatatacctcttccaatactttaattacttct |
1927502 |
T |
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| Q |
493 |
ttatcatctgtcaaatcttcccattttgaaataggtatcaatagtaatgctcttctgaattggttatatctggctactttcctctctctatccct |
587 |
Q |
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| T |
1927501 |
ttatcatctgtcaaatcttcccattttgaaataggtatcattagtagtcctctccttagttggttatatctaggtacattcctctctctatccct |
1927407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 343 - 587
Target Start/End: Complemental strand, 1941761 - 1941517
Alignment:
| Q |
343 |
ttttaccttgatgccatgataaggaatatcacaaaagatgtctcactaattgcaaaaccctttatcttcttctctgccatgagacctactagtgtatcaa |
442 |
Q |
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| T |
1941761 |
ttttacctagatgccatgagaaggaagattaaaaaagctgtctcactaattgcaaaaccctttatcttcttctctgccatgagacctacaagcacatcaa |
1941662 |
T |
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| Q |
443 |
gctcctcaacatcattcccatatacctcttccaatactttgattacttccttatcatctgtcaaatcttcccattttgaaataggtatcaatagtaatgc |
542 |
Q |
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| T |
1941661 |
gctcctcaacatcatcaccatatatctcttccaatacttttataacttccttatcatctgttaaatcttcccatttagaaataggtatcatgaatagtcc |
1941562 |
T |
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| Q |
543 |
tcttctgaattggttatatctggctactttcctctctctatccct |
587 |
Q |
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| T |
1941561 |
tctcctgaattggttatatcttgctacacctctctctctatccct |
1941517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 1957001 - 1956962
Alignment:
| Q |
18 |
ccttcaaagtgcatgaaagttcaatcaaatccataatatg |
57 |
Q |
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| T |
1957001 |
ccttcaaagtgcatgaaaatttaatcaaatccataatatg |
1956962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 36774912 - 36774869
Alignment:
| Q |
96 |
atactgaggcatatcacacttgttcttatgggatttaaaaatta |
139 |
Q |
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| T |
36774912 |
atactgaggcatatcacacttgttcttatgggatttaaaaatta |
36774869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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