View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_73 (Length: 315)
Name: NF3726_low_73
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_73 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 88 - 249
Target Start/End: Original strand, 44986802 - 44986962
Alignment:
| Q |
88 |
aagaaatggagtgcccttcccacaagtttctatattcgtgatcactattgtaatgttgtcaaagcaagaaaaacttggaccccttgttgtttatttactc |
187 |
Q |
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| T |
44986802 |
aagaaatggagtgccct-cccacaagtttctatattcgtgatcactattgtaatgttgtcaaagcaagaacaacttggaccccttgttgtttatttactc |
44986900 |
T |
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| Q |
188 |
ttgaagttgaaaccacatgttttcttatccaatggatgagaaaattaggcatacaaaatgtc |
249 |
Q |
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| T |
44986901 |
ttgaagttgaaaccacatgttttcttatccaatggatgagaaaattaggcatacaaaatgtc |
44986962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 44986523 - 44986601
Alignment:
| Q |
15 |
atgaataatcctatagaatccgaaaaatgcatacgtaacgtaatgatccaaaatccattattttgagtctcaaaagaaa |
93 |
Q |
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| T |
44986523 |
atgaataatcctatagaatccgaaaaatgcatacgtaacgtaatgatccaaaatccattattttgagtctcaaaagaaa |
44986601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 262 - 308
Target Start/End: Original strand, 44986984 - 44987030
Alignment:
| Q |
262 |
actagtgagacgattgttaattgtcttaatgagtcccttgatgatgt |
308 |
Q |
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| T |
44986984 |
actagtgagacgattgttaattgtcttaatgagtcccttgatcatgt |
44987030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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