View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_74 (Length: 310)
Name: NF3726_low_74
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_74 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 26357565 - 26357874
Alignment:
| Q |
11 |
cagagagcaacagttatgcatagcgagtgatatagtacaattaagttgagcagggaacagaaattgagcaacaattatacataaccaagagtaagaacta |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26357565 |
cagagagcaacagttatgcatagcgagtgatatagtacaattaagttgagcagggaacagaaattgagcaacaattatacataaccaagagtaagaacta |
26357664 |
T |
|
| Q |
111 |
agaactgatgcaatacctaaagattcaacaagctattaccaacactccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagtt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26357665 |
agaactgatgcaatacctaaagattcaacaagctattactaacactccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagtt |
26357764 |
T |
|
| Q |
211 |
ggttgtac----------aacactgatatcaaacatgtatgctagtaatatccaaatcactgtgttggatggactgagaagacaatttcaaatatatgcc |
300 |
Q |
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| T |
26357765 |
ggttgtacaacactgataaacactgatatcaaacatgtaagctagtaatatccaaatcactgtgttggatggactgagaagacaatttcaaatatatgcc |
26357864 |
T |
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| Q |
301 |
agaaacaact |
310 |
Q |
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|||||||||| |
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| T |
26357865 |
agaaacaact |
26357874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 57 - 310
Target Start/End: Original strand, 51759446 - 51759692
Alignment:
| Q |
57 |
tgagcagggaacagaaattgagcaacaattatacataaccaagagtaagaactaagaactgatgcaatacctaaagattcaacaagctattaccaacact |
156 |
Q |
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| T |
51759446 |
tgagctgggaacataaattaagcaacaattatacataaccaagagtaag-------aactgatgcagtatctaaagattcaacaagctattactaacact |
51759538 |
T |
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| Q |
157 |
ccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtatgctagtaatatccaaa |
256 |
Q |
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| |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||| |||||||||||| ||| |
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| T |
51759539 |
ctaaatcaaaagggcagcatccaactgttatactaacattccaaatcaaaagttggttgtacaaaactgatatcatacatgtaagctagtaatatctaaa |
51759638 |
T |
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| Q |
257 |
tcactgtgttggatggactgagaagacaatttcaaatatatgccagaaacaact |
310 |
Q |
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| T |
51759639 |
taactatgttgaatggattgagaagacaattttgaatatataccagaaacaact |
51759692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 4e-75; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 54 - 310
Target Start/End: Original strand, 6684843 - 6685092
Alignment:
| Q |
54 |
agttgagcagggaacagaaattgagcaacaattatacataaccaagagtaagaactaagaactgatgcaatacctaaagattcaacaagctattaccaac |
153 |
Q |
| |
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|||||||| ||||||| ||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| | ||| |
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| T |
6684843 |
agttgagctgggaacataaattatgcaacaattatacataaccaagagtaag-------aactgatgcagtacctaaagattcaacaagctatacctaac |
6684935 |
T |
|
| Q |
154 |
actccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtatgctagtaatatcc |
253 |
Q |
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|||| |||||||||||| ||||||||| ||||||||||| || |||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||| |
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| T |
6684936 |
actctaaatcaaaagggcagcatccaactgttatactaatattccaaatcaaaagttggttgtacaaaactgatatcatacatgtaagctagtaatatcc |
6685035 |
T |
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| Q |
254 |
aaatcactgtgttggatggactgagaagacaatttcaaatatatgccagaaacaact |
310 |
Q |
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|||| ||| ||||| |||||||||||||||||||| ||||||||||| |||||||| |
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| T |
6685036 |
aaataactatgttgaatggactgagaagacaattttgaatatatgccaaaaacaact |
6685092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 64 - 310
Target Start/End: Original strand, 30821828 - 30822067
Alignment:
| Q |
64 |
ggaacagaaattgagcaacaattatacataaccaagagtaagaactaagaactgatgcaatacctaaagattcaacaagctattaccaacactccaaatc |
163 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||| ||||||| || |||||||| ||||||||||||||||| ||||||| |||| |
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| T |
30821828 |
ggaacagaaattaagcaacaattataaataaccaagagtaag-------aactgattcagtacctaaatattcaacaagctattactaacactcttaatc |
30821920 |
T |
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| Q |
164 |
aaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtatgctagtaatatccaaatcactgt |
263 |
Q |
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||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| ||| | |
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| T |
30821921 |
aaaagggcagcatccaactgttatactaacattccaaatcaaaagttggttgtacaaaactgatatcatacatgtaagctagtaatatccaaataactat |
30822020 |
T |
|
| Q |
264 |
gttggatggactgagaagacaatttcaaatatatgccagaaacaact |
310 |
Q |
| |
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|||| ||||| |||||||||||||| ||||||||||||||| |||| |
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| T |
30822021 |
gttgaatggattgagaagacaattttgaatatatgccagaaaaaact |
30822067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 54 - 301
Target Start/End: Original strand, 30812556 - 30812796
Alignment:
| Q |
54 |
agttgagcagggaacagaaattgagcaacaattatacataaccaagagtaagaactaagaactgatgcaatacctaaagattcaacaagctattaccaac |
153 |
Q |
| |
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|||||||| ||||||| ||||| ||||||||||||| ||||||||||||||| ||||||| || |||||||||||||||||||||||||| ||| |
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| T |
30812556 |
agttgagctgggaacataaattaagcaacaattataaataaccaagagtaag-------aactgattcagtacctaaagattcaacaagctattactaac |
30812648 |
T |
|
| Q |
154 |
actccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtatgctagtaatatcc |
253 |
Q |
| |
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|||| |||||| |||| | ||||||| |||||||||||||| |||||||||| |||||||||||| ||| |||||| ||||||| ||||||||||||| |
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| T |
30812649 |
actcttaatcaacagggcaacatccaactgttatactaacatttcaaatcaaaaattggttgtacaaaactaatatcatacatgtaagctagtaatatcc |
30812748 |
T |
|
| Q |
254 |
aaatcactgtgttggatggactgagaagacaatttcaaatatatgcca |
301 |
Q |
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|||| ||| ||||| |||||||||||||||||||| |||| |||||| |
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| T |
30812749 |
aaataactatgttgaatggactgagaagacaattttgaataaatgcca |
30812796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 54 - 267
Target Start/End: Original strand, 12592521 - 12592727
Alignment:
| Q |
54 |
agttgagcagggaacagaaattgagcaacaattatacataaccaagagtaagaactaagaactgatgcaatacctaaagattcaacaagctattaccaac |
153 |
Q |
| |
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|||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||| | |||| | ||||||||||||||| |||||||||| ||| |
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| T |
12592521 |
agttgagctgggaacagaaattaagcaataattatacataaccaagagaaagaatt-------gatgtagtacctaaagattcaataagctattactaac |
12592613 |
T |
|
| Q |
154 |
actccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtatgctagtaatatcc |
253 |
Q |
| |
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| | |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| || ||||||| ||||||||||||| |
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| T |
12592614 |
aaactaaatcaaaagggcagcatccaactgttatactaacattccaaatcaaaagttggttgtacaaaactgataacatacatgtaagctagtaatatcc |
12592713 |
T |
|
| Q |
254 |
aaatcactgtgttg |
267 |
Q |
| |
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|||| ||| ||||| |
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| T |
12592714 |
aaataactatgttg |
12592727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 54 - 310
Target Start/End: Original strand, 27810568 - 27810803
Alignment:
| Q |
54 |
agttgagcagggaacagaaattgagcaacaattatacataaccaagagtaagaactaagaactgatgcaatacctaaagattcaacaagctattaccaac |
153 |
Q |
| |
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||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||| |
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| T |
27810568 |
agttgagatgggaacagaaattaagcaacaattataaataaccaagagtaagaact-------gatgcagtacctaaagattcaacaagctattactaac |
27810660 |
T |
|
| Q |
154 |
actccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagttggttgtacaacactgatatcaaacatgtatgc--tagtaatat |
251 |
Q |
| |
|
|||| |||||||||||| || |||||| |||||||||||||||||||||||| |||||||||| ||||||| || ||||||||| |
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|
| T |
27810661 |
actctaaatcaaaagggcag----------------taacattccaaatcaaaagttggttgtacaaaactgatatcatacatgtaagctatagtaatat |
27810744 |
T |
|
| Q |
252 |
ccaaatcactgtgttggatggactgagaagacaatttcaaatatatgccagaaacaact |
310 |
Q |
| |
|
|||||| ||| ||||| |||||||||||| ||||||| |||||| |||||||| |||| |
|
|
| T |
27810745 |
ccaaataactatgttgaatggactgagaatacaattttgaatataagccagaaaaaact |
27810803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 2942576 - 2942525
Alignment:
| Q |
54 |
agttgagcagggaacagaaattgagcaacaattatacataaccaagagtaag |
105 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||| ||||||||||||||||||| |
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|
| T |
2942576 |
agttgagctgggaacagaaattaagcaacaatcatacataaccaagagtaag |
2942525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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