View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3726_low_76 (Length: 309)

Name: NF3726_low_76
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3726_low_76
NF3726_low_76
[»] chr7 (2 HSPs)
chr7 (18-309)||(20337069-20337360)
chr7 (257-297)||(32919013-32919053)
[»] chr4 (3 HSPs)
chr4 (43-208)||(20861106-20861268)
chr4 (259-297)||(13252537-13252575)
chr4 (257-297)||(12593645-12593685)
[»] chr5 (3 HSPs)
chr5 (257-309)||(2678105-2678157)
chr5 (256-297)||(34216550-34216591)
chr5 (256-296)||(7927352-7927392)
[»] chr3 (5 HSPs)
chr3 (257-309)||(33256307-33256359)
chr3 (258-296)||(50146487-50146525)
chr3 (256-309)||(38359327-38359380)
chr3 (257-309)||(33374490-33374542)
chr3 (268-304)||(49568701-49568737)
[»] chr2 (1 HSPs)
chr2 (257-298)||(3723881-3723922)


Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 20337069 - 20337360
Alignment:
Q  18 gaatgaatagacaaaacttcatctatcgaagctccaagcttggccatgaagttcgcacagtattgattgtcttctctgaacgaatgctggagagagtagt 117  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  20337069 gaatgaatagacaaaacgtcatctatcgaagctccaagtttggccatgaagttcgcacagtactgattgtcttctctgagcgaatgctggagagagtagt 20337168  T
Q  118 ttctagagttgagaaggtccttaatgttctgtataagaaaaacatacacatgatactgaggaagatcatccttcatgaggttgaccgtgagaaggcaatc 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  20337169 ttctagagttgagaaggtccttaatgttctggataagaaaaacatacacatgatactgaggaagatcatccttgatgaggttgaccgcgagaaggcaatc 20337268  T
Q  218 atttggacatttaatctagacacatacaaccatttgcgaaagagaaatgttatttatataatcattttgtgacaatttttatgataattttc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20337269 atttggacatttaatctagacacatacaaccatttgcgaaagagaaatgttatttatataatcattttgtgacaatttttatgataattttc 20337360  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 32919053 - 32919013
Alignment:
Q  257 aagagaaatgttatttatataatcattttgtgacaattttt 297  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  32919053 aagagaaatgatatttatacaatcattttgtgacaattttt 32919013  T

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Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 43 - 208
Target Start/End: Complemental strand, 20861268 - 20861106
Alignment:
Q  43 tcgaagctccaagcttggccatgaagttcgcacagtattgattgtcttctctgaacgaatgctggagagagtagtttctagagttgagaaggtccttaat 142  Q
    ||||||||||||||||||||||||||| |||||| |   ||||  ||||||| | ||||||||  |||||| ||||||||||||| || | ||| |||||    
T  20861268 tcgaagctccaagcttggccatgaagtccgcacact---gattaccttctcttagcgaatgctaaagagagaagtttctagagttcaggaagtctttaat 20861172  T
Q  143 gttctgtataagaaaaacatacacatgatactgaggaagatcatccttcatgaggttgaccgtgag 208  Q
    |||||| ||||||| |||||| ||||| |||| ||||||||||||||| |||||||||||||||||    
T  20861171 gttctgaataagaacaacataaacatggtactaaggaagatcatccttgatgaggttgaccgtgag 20861106  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 297
Target Start/End: Original strand, 13252537 - 13252575
Alignment:
Q  259 gagaaatgttatttatataatcattttgtgacaattttt 297  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  13252537 gagaaatgatatttatataatcattttgtgataattttt 13252575  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 12593685 - 12593645
Alignment:
Q  257 aagagaaatgttatttatataatcattttgtgacaattttt 297  Q
    |||||||||| |||||||||||| ||||| |||||||||||    
T  12593685 aagagaaatgatatttatataattattttttgacaattttt 12593645  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 2678157 - 2678105
Alignment:
Q  257 aagagaaatgttatttatataatcattttgtgacaatttttatgataattttc 309  Q
    ||||||||| ||||||||||||  ||||||| | |||||||||||||||||||    
T  2678157 aagagaaatattatttatataactattttgtaataatttttatgataattttc 2678105  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 297
Target Start/End: Complemental strand, 34216591 - 34216550
Alignment:
Q  256 aaagagaaatgttatttatataatcattttgtgacaattttt 297  Q
    ||||| ||||| |||||||||||| |||||||||||||||||    
T  34216591 aaagaaaaatgatatttatataattattttgtgacaattttt 34216550  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 7927352 - 7927392
Alignment:
Q  256 aaagagaaatgttatttatataatcattttgtgacaatttt 296  Q
    ||||||||||| |||||||| ||||||||||||| ||||||    
T  7927352 aaagagaaatgatatttatacaatcattttgtgataatttt 7927392  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 309
Target Start/End: Original strand, 33256307 - 33256359
Alignment:
Q  257 aagagaaatgttatttatataatcattttgtgacaatttttatgataattttc 309  Q
    |||||||||| |||||||| || ||||||| |||||||||||||| |||||||    
T  33256307 aagagaaatgatatttatacaaccattttgagacaatttttatgacaattttc 33256359  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 296
Target Start/End: Original strand, 50146487 - 50146525
Alignment:
Q  258 agagaaatgttatttatataatcattttgtgacaatttt 296  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  50146487 agagaaatgatatttgtataatcattttgtgacaatttt 50146525  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 38359380 - 38359327
Alignment:
Q  256 aaagagaaatgttatttatataatcattttgtgacaatttttatgataattttc 309  Q
    ||||||||||| ||||| || ||||||||| | |||| ||||||||||||||||    
T  38359380 aaagagaaatgatatttgtacaatcattttttaacaacttttatgataattttc 38359327  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 309
Target Start/End: Original strand, 33374490 - 33374542
Alignment:
Q  257 aagagaaatgttatttatataatcattttgtgacaatttttatgataattttc 309  Q
    |||||||||| |||||  |||| |||||| |||||||||||||||||| ||||    
T  33374490 aagagaaatgatatttgaataaccattttatgacaatttttatgataactttc 33374542  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 304
Target Start/End: Complemental strand, 49568737 - 49568701
Alignment:
Q  268 tatttatataatcattttgtgacaatttttatgataa 304  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  49568737 tatttgtataagcattttgtgacaatttttatgataa 49568701  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 298
Target Start/End: Original strand, 3723881 - 3723922
Alignment:
Q  257 aagagaaatgttatttatataatcattttgtgacaattttta 298  Q
    |||| ||||| |||||||||||| ||||||||||||||||||    
T  3723881 aagaaaaatgatatttatataatgattttgtgacaattttta 3723922  T

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