View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_78 (Length: 304)
Name: NF3726_low_78
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_78 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 4564625 - 4564918
Alignment:
| Q |
1 |
agagatctaggaagggttaaaagaatcaaattccttaataaagaaacaagagaaagaaggttaagtgaaagttgtgtatgtgaatgtgtgggtcatatat |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4564625 |
agagatataggaagggttaaaagaatcaaattccttaataaagaaacaagagaaagaaggttaagtgaaagttgtgtatgtgaatgtgtgggtcatatat |
4564724 |
T |
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| Q |
101 |
ggtcatttccttcctaccacttccatgtgaacgtggggtgggtcctgttgcttcaacctctcttctttagcatgtggattttgtcagagggaaaaaactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4564725 |
ggtcatttccttcctaccacttccatgtgaacgtggggtgggtcctgttgcttcaacctctcttctttagcatgtggattttgtcagagggaaaaaactt |
4564824 |
T |
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| Q |
201 |
aaacaggtggagaagtggatttgtatactcattacccaatagaaaagaaaattaaataagaaa-------aagtggatatagatagagagatat |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
4564825 |
aaacaggtggagaagtggatttgtatactcattacccaatagaaaagaaaattgaataagaaaattacccaagtggatatagatagagagatat |
4564918 |
T |
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