View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3726_low_8 (Length: 589)

Name: NF3726_low_8
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3726_low_8
NF3726_low_8
[»] chr7 (3 HSPs)
chr7 (141-582)||(26281796-26282241)
chr7 (1-159)||(26281622-26281778)
chr7 (264-491)||(24805306-24805541)
[»] chr4 (2 HSPs)
chr4 (264-494)||(1774797-1775036)
chr4 (490-572)||(1775146-1775228)
[»] chr8 (2 HSPs)
chr8 (264-491)||(16239307-16239542)
chr8 (490-572)||(16239655-16239737)
[»] chr6 (1 HSPs)
chr6 (264-491)||(1708607-1708842)
[»] chr5 (2 HSPs)
chr5 (264-491)||(15275585-15275820)
chr5 (490-572)||(15275933-15276015)
[»] chr3 (4 HSPs)
chr3 (264-491)||(18151197-18151432)
chr3 (362-491)||(12413296-12413432)
chr3 (490-572)||(18151545-18151627)
chr3 (499-572)||(12413554-12413627)


Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 141 - 582
Target Start/End: Original strand, 26281796 - 26282241
Alignment:
Q  141 aaatcaacccatctctcatttctaagcatccttcttagaaattattcacataatatcataagttgggacaggacaattatgagaagaaatcaaaacaaaa 240  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  26281796 aaatcaactcatctctcatttctaagcatccttcttagaaattatgcacataataacataagttgggacaagacaattatgagaagaaatcaaaacaaaa 26281895  T
Q  241 tgaaatcatgtccaacatgaccgtaccttaaaagagtagtgaatcagtgtcacttgtagtttgttgattgttaccaatagaaccatttcgagcacttgca 340  Q
    | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26281896 taaaatcatgtccaacatgaccgtaccttaaacgagtagtgaatcagtgtcacttgtagtttgttgattgttaccaatagaaccatttcgagcacttgca 26281995  T
Q  341 acatcaggtacctatgccaataaagtgcatttcat----tttcttgtaaaacattcttgaacttgaaatataacatttcatatgctacagcctgtaaaac 436  Q
    ||||||||||||||||| ||||||||| |||||||    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26281996 acatcaggtacctatgcgaataaagtgtatttcatttaatttcttgtaaaacattcttgaagttgaaatataacatttcatatgctacagcctgtaaaac 26282095  T
Q  437 aacattaatttgttgatcttcagaaaatcgcatttgaagcacatcaacaagattttcagacgctttcacttttcagtatgtatcattcttccaattcgta 536  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26282096 aacattaatttgtggatcttcagaaaatcgcatttgaagcacatcaacaagattttcagacgctttcacttttcagtatgtatcattcttccaattcgta 26282195  T
Q  537 gaatcaccggtgatttgaaagttttctgaattttctgcctttgcta 582  Q
    |||||||| ||||||||||| |||| |||||||||||||| |||||    
T  26282196 gaatcaccagtgatttgaaatttttttgaattttctgcctctgcta 26282241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 26281622 - 26281778
Alignment:
Q  1 tacctatgtttaaagggcactgaactcataattaaataaagacaaaactataactctcccctcttacaaaaactgctctgcacatcaaagtatctgcagg 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26281622 tacctatgtttaaagggtactgaactcataattaaataaagacaaaacta--actctcccctcttacaaaaactgctctgcacatcaaagtatctgcagg 26281719  T
Q  101 tagtttctaaggccttactatgttgagattaaaggcatttaaatcaacccatctctcat 159  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  26281720 tagtttctaaggccttgctatgttgagattaaaggcatttaagtcaacccatctctcat 26281778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 264 - 491
Target Start/End: Complemental strand, 24805541 - 24805306
Alignment:
Q  264 taccttaaaagagtagtgaatcagtgtcacttgtagtttgttgattgttaccaatagaaccatttcgagcacttgcaacatcaggtacctatg-ccaata 362  Q
    ||||||||||| | |||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |   || |    
T  24805541 taccttaaaagtgcagtgaaccagtgccacttgtagtttgttgattattaccaatagaaccatttggagcacttgcaacatcaggtacctaagtgaaaaa 24805442  T
Q  363 aagtgcatttcattttcttgtaaaacattcttgaacttgaaatataacatt-------tcatatgctacagcctgtaaaacaacattaatttgttgatct 455  Q
    ||||| |||| ||||||||| |||||||||||||| |||||| |||| |||       || |  |||||||||||||| ||| ||||||||||| ||||     
T  24805441 aagtgtattttattttcttgaaaaacattcttgaagttgaaaaataagatttattacctcttgagctacagcctgtaagacagcattaatttgtggatca 24805342  T
Q  456 tcagaaaatcgcatttgaagcacatcaacaagattt 491  Q
    |||||||||||||||||||||||| |||||||||||    
T  24805341 tcagaaaatcgcatttgaagcacagcaacaagattt 24805306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 264 - 494
Target Start/End: Original strand, 1774797 - 1775036
Alignment:
Q  264 taccttaaaagagtagtgaatcagtgtcacttgtagtttgttgattgttaccaatagaaccatttcgagcacttgcaacatcaggtaccta--tgccaat 361  Q
    ||||||||||| | |||||| ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||  ||  ||     
T  1774797 taccttaaaagtgcagtgaaccagtgccacttgtagtttgttgattattaccaatagaaccatttggagcacttgcaacatcaggtacctaagtgaaaaa 1774896  T
Q  362 aaagtgcatttcattttcttgtaaaacattcttgaacttgaaatataacatt-------tcatatgctacagcctgtaaaacaacattaatttgttgatc 454  Q
    ||| || |||| ||||||||| |||||||||||||| |||||| |||| |||       || |  |||||||||||||| ||| ||||||||||| ||||    
T  1774897 aaaatgtattttattttcttgaaaaacattcttgaagttgaaaaataagatttattacctcttgagctacagcctgtaagacatcattaatttgtggatc 1774996  T
Q  455 ttcagaaaatcgcatttgaagcacatcaacaagattttca 494  Q
     |||||||||||||||||||||||| ||||||||||||||    
T  1774997 atcagaaaatcgcatttgaagcacaacaacaagattttca 1775036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 490 - 572
Target Start/End: Original strand, 1775146 - 1775228
Alignment:
Q  490 tttcagacgctttcacttttcagtatgtatcattcttccaattcgtagaatcaccggtgatttgaaagttttctgaattttct 572  Q
    |||||| | ||||||||||| |||||||||||||| ||||||| ||||||||  | |||| |||| | |||||||||||||||    
T  1775146 tttcaggccctttcacttttgagtatgtatcattcatccaatttgtagaatcttcagtgacttgagaattttctgaattttct 1775228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 9e-53; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 264 - 491
Target Start/End: Original strand, 16239307 - 16239542
Alignment:
Q  264 taccttaaaagagtagtgaatcagtgtcacttgtagtttgttgattgttaccaatagaaccatttcgagcacttgcaacatcaggtacctatg-ccaata 362  Q
    ||||||||||| | |||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |   || |    
T  16239307 taccttaaaagtgcagtgaaccagtgccacttgtagtttgttgattattaccaatagaaccatttggagcacttgcaacatcaggtacctaagtgaaaaa 16239406  T
Q  363 aagtgcatttcattttcttgtaaaacattcttgaacttgaaatataacatt-------tcatatgctacagcctgtaaaacaacattaatttgttgatct 455  Q
    ||||| |||| |||| |||| |||||||||||||| |||||| |||| |||       || |  |||||||||||||| ||||||||||||||| ||||     
T  16239407 aagtgtattttatttacttgaaaaacattcttgaagttgaaaaataagatttattacctcttgagctacagcctgtaagacaacattaatttgtggatca 16239506  T
Q  456 tcagaaaatcgcatttgaagcacatcaacaagattt 491  Q
    |||||||||||||||||||||||| |||||||||||    
T  16239507 tcagaaaatcgcatttgaagcacaacaacaagattt 16239542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 490 - 572
Target Start/End: Original strand, 16239655 - 16239737
Alignment:
Q  490 tttcagacgctttcacttttcagtatgtatcattcttccaattcgtagaatcaccggtgatttgaaagttttctgaattttct 572  Q
    |||||| | ||||||||||| |||||||||||||| ||||||| ||||||||  | |||| |||||| |||||||||||||||    
T  16239655 tttcaggccctttcacttttgagtatgtatcattcatccaatttgtagaatcttcagtgacttgaaaattttctgaattttct 16239737  T

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Target: chr6 (Bit Score: 106; Significance: 9e-53; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 264 - 491
Target Start/End: Complemental strand, 1708842 - 1708607
Alignment:
Q  264 taccttaaaagagtagtgaatcagtgtcacttgtagtttgttgattgttaccaatagaaccatttcgagcacttgcaacatcaggtacctatg-ccaata 362  Q
    ||||||||||| | |||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |   || |    
T  1708842 taccttaaaagtgcagtgaaccagtgccacttgtagtttgttgattattaccaatagaaccatttggagcacttgcaacatcaggtacctaagtgaaaaa 1708743  T
Q  363 aagtgcatttcattttcttgtaaaacattcttgaacttgaaatataacatt-------tcatatgctacagcctgtaaaacaacattaatttgttgatct 455  Q
    ||||| |||| ||||||||| |||||||||||||| |||||| |||| |||       || |  |||||||||||||| ||| ||||||||||| ||||     
T  1708742 aagtgtattttattttcttgaaaaacattcttgaagttgaaaaataagatttattacctcttgagctacagcctgtaagacagcattaatttgtggatca 1708643  T
Q  456 tcagaaaatcgcatttgaagcacatcaacaagattt 491  Q
    |||||||||||||||||||||||| |||||||||||    
T  1708642 tcagaaaatcgcatttgaagcacagcaacaagattt 1708607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 9e-53; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 264 - 491
Target Start/End: Original strand, 15275585 - 15275820
Alignment:
Q  264 taccttaaaagagtagtgaatcagtgtcacttgtagtttgttgattgttaccaatagaaccatttcgagcacttgcaacatcaggtacctatg-ccaata 362  Q
    ||||||||||| | |||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |   || |    
T  15275585 taccttaaaagtgcagtgaaccagtgccacttgtagtttgttgattattaccaatagaaccatttggagcacttgcaacatcaggtacctaagtgaaaaa 15275684  T
Q  363 aagtgcatttcattttcttgtaaaacattcttgaacttgaaatataacatt-------tcatatgctacagcctgtaaaacaacattaatttgttgatct 455  Q
    ||||| |||| ||||||||| |||||||||||||| |||||| |||| |||       || |  |||||||||||||| ||| ||||||||||| ||||     
T  15275685 aagtgtattttattttcttgaaaaacattcttgaagttgaaaaataagatttattacctcttgagctacagcctgtaagacagcattaatttgtggatca 15275784  T
Q  456 tcagaaaatcgcatttgaagcacatcaacaagattt 491  Q
    |||||||||||||||||||||||| |||||||||||    
T  15275785 tcagaaaatcgcatttgaagcacagcaacaagattt 15275820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 490 - 572
Target Start/End: Original strand, 15275933 - 15276015
Alignment:
Q  490 tttcagacgctttcacttttcagtatgtatcattcttccaattcgtagaatcaccggtgatttgaaagttttctgaattttct 572  Q
    |||||| | ||||||||||| |||||||||||||| ||||||| ||||||||  | |||| |||||| |||||||||||||||    
T  15275933 tttcaggccctttcacttttgagtatgtatcattcatccaatttgtagaatcttcagtgacttgaaaattttctgaattttct 15276015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 9e-53; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 264 - 491
Target Start/End: Original strand, 18151197 - 18151432
Alignment:
Q  264 taccttaaaagagtagtgaatcagtgtcacttgtagtttgttgattgttaccaatagaaccatttcgagcacttgcaacatcaggtacctatg-ccaata 362  Q
    ||||||||||| | |||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |   || |    
T  18151197 taccttaaaagtgcagtgaaccagtgccacttgtagtttgttgattattaccaatagaaccatttggagcacttgcaacatcaggtacctaagtgaaaaa 18151296  T
Q  363 aagtgcatttcattttcttgtaaaacattcttgaacttgaaatataacatt-------tcatatgctacagcctgtaaaacaacattaatttgttgatct 455  Q
    ||||| |||| ||||||||| |||||||||||||| |||||| |||| |||       || |  |||||||||||||| ||| ||||||||||| ||||     
T  18151297 aagtgtattttattttcttgaaaaacattcttgaagttgaaaaataagatttattacctcttgagctacagcctgtaagacagcattaatttgtggatca 18151396  T
Q  456 tcagaaaatcgcatttgaagcacatcaacaagattt 491  Q
    |||||||||||||||||||||||| |||||||||||    
T  18151397 tcagaaaatcgcatttgaagcacagcaacaagattt 18151432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 362 - 491
Target Start/End: Original strand, 12413296 - 12413432
Alignment:
Q  362 aaagtgcatttcattttcttgtaaaacattcttgaacttgaaatataacatttcatat-------gctacagcctgtaaaacaacattaatttgttgatc 454  Q
    |||||| |||| ||||||||| |||||||||||||| |||||| |||| ||||| ||        |||||||||||||| ||| ||||||||||| ||||    
T  12413296 aaagtgtattttattttcttgaaaaacattcttgaagttgaaaaataagatttcttacctcttgagctacagcctgtaagacagcattaatttgtggatc 12413395  T
Q  455 ttcagaaaatcgcatttgaagcacatcaacaagattt 491  Q
     |||||||||||||||||||||||| |||||||||||    
T  12413396 atcagaaaatcgcatttgaagcacaacaacaagattt 12413432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 490 - 572
Target Start/End: Original strand, 18151545 - 18151627
Alignment:
Q  490 tttcagacgctttcacttttcagtatgtatcattcttccaattcgtagaatcaccggtgatttgaaagttttctgaattttct 572  Q
    |||||| | ||||||||||| |||||||||||||| ||||||| ||||||||  | |||| |||||| |||||||||||||||    
T  18151545 tttcaggccctttcacttttgagtatgtatcattcatccaatttgtagaatcttcagtgacttgaaaattttctgaattttct 18151627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 499 - 572
Target Start/End: Original strand, 12413554 - 12413627
Alignment:
Q  499 ctttcacttttcagtatgtatcattcttccaattcgtagaatcaccggtgatttgaaagttttctgaattttct 572  Q
    ||||||||||| |||||||||||||| ||||||| ||||||||  | ||||  ||||| |||||||||||||||    
T  12413554 ctttcacttttgagtatgtatcattcgtccaatttgtagaatcttcagtgacgtgaaaattttctgaattttct 12413627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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