View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_81 (Length: 299)
Name: NF3726_low_81
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_81 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 291
Target Start/End: Complemental strand, 34699818 - 34699553
Alignment:
| Q |
20 |
gaacgttgtttagatttgtcacactttgacatttctggtttgaatttagctaattttgatagttcttcaacacttttcacaacgtcttccacgcgtgcta |
119 |
Q |
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| T |
34699818 |
gaacgttgtttagatttgtcacactttgacatttctggtttgaatttagctaattttgatagttcttcaacacttttcacaatgtcttccacacgtgcta |
34699719 |
T |
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| Q |
120 |
cagtttctgtaagcaaagaaactaccgtgaccacttgaattacttccattattgggatttccatttttgcatcaccaagggatgatgtttcttttgcatt |
219 |
Q |
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| T |
34699718 |
cagtttcaataagcaaagaaattaccgtgaccacttgaattacttccattattgggatttccatttttgcatcaccaagggatgatgtttcttttgcatt |
34699619 |
T |
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| Q |
220 |
aacattgtgtttgtgtgtgtttgaatatgattttaataaattttgtagctcttgtgtagcaatattcatctc |
291 |
Q |
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| T |
34699618 |
aacatt------gtgtgtgtttgaatatgattttaataaattttgtagctcttgtgtagcaatattcatctc |
34699553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 196
Target Start/End: Complemental strand, 34683569 - 34683408
Alignment:
| Q |
35 |
ttgtcacactttgacatttctggtttgaatttagctaattttgatagttcttcaacacttttcacaacgtcttccacgcgtgctacagtttctgtaagca |
134 |
Q |
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| T |
34683569 |
ttgtcacatttggacatttctggtttaaacttagctaaatctgataattcttcaacacatttcacaatgtcttctacacgagctacaatttcactaagca |
34683470 |
T |
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| Q |
135 |
aagaaactaccgtgaccacttgaattacttccattattgggatttccatttttgcatcacca |
196 |
Q |
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| T |
34683469 |
aagaaacaactgtgaccacttgaattaattctattattgggatttcgagttttgcatcacca |
34683408 |
T |
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