View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_83 (Length: 298)
Name: NF3726_low_83
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_83 |
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Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 31900618 - 31900406
Alignment:
| Q |
1 |
tagaagtatactaagaaaagaaacgcaaatataacggcaaaatgcatacataaaatgcacctcaaagtacaaaggtatattaatgtgttacatgtttggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||| | || |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31900618 |
tagaagtatactaagaaaagaaacgcaaatataatgagaa----------taaaatgcacctcaaagtccaaaggtatattaatgtgttacatgtttggc |
31900529 |
T |
|
| Q |
101 |
gaggataagtaaccgttaataaaaataaagtataacatttgtatcttgaaaacaatattactatnnnnnnnttatgtaataataattagacaacgtttat |
200 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
31900528 |
gaggataagtaactgttaataaaaataaagtatatcatttgtatcttgaaaacaatattactataaaaaaattatgtaacaataattagacaacgtttat |
31900429 |
T |
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| Q |
201 |
ttttctacatcaatataaccctt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
31900428 |
ttttctacatcaatataaccctt |
31900406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 50 - 225
Target Start/End: Complemental strand, 888405 - 888230
Alignment:
| Q |
50 |
ataaaatgcacctcaaagtacaaaggtatattaatgtgttacatgtttggtgaggataagtaaccgttaataaaaataaagtataacatttgtatcttga |
149 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
888405 |
ataaaatgcacctcaaagttcaaaggtatattaatgtgttacatgtttggcgaggataagtaaccgttgataaaaataaagtatatcatttgtatcttga |
888306 |
T |
|
| Q |
150 |
aaacaatattactatnnnnnnnttatgtaataataattagacaacgtttatttttctacatcaatataacccttca |
225 |
Q |
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||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
888305 |
aaacaatattactataaaaaaattatgtaacaataattagacaacatttatttttctacactaatataacccttca |
888230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 888444 - 888411
Alignment:
| Q |
1 |
tagaagtatactaagaaaagaaacgcaaatataa |
34 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
888444 |
tagaagtatactaagaaaagaaatgcaaatataa |
888411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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