View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_85 (Length: 296)
Name: NF3726_low_85
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_85 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0290 (3 HSPs) |
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| [»] scaffold1974 (1 HSPs) |
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| [»] scaffold1878 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 18983377 - 18983092
Alignment:
| Q |
10 |
attattctattcatatgacaaattttaacatttgaattatttaaaataaataaccataatggattatctaacctttggttaaaattttctaattttattt |
109 |
Q |
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| T |
18983377 |
attattctattcatatgacaaattttaacatttgaattatttaaaataaacaaccataatggattatctaacctttggttaaaattttctaactttattt |
18983278 |
T |
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| Q |
110 |
tgaaatttattagatcacttaatctcctctacaaatcttgactgactttcttctttatcaaccataatccaaatggagaaacatttatataaattaaaat |
209 |
Q |
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| T |
18983277 |
tgaaatttattagatcacttaatctcctcatcaaatcttgactgactttcttctttatcaaccataatccaaatggaaaaacatttatataaattaaaat |
18983178 |
T |
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| Q |
210 |
aatnnnnnnnnnncttacgagtatttgttatttcttgataacgtaatattttataaattatcacacatacaaattttgtatagttct |
296 |
Q |
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| T |
18983177 |
aatcaaacaaagactta-gattatttgttatttcttgataacgtaatattttataaattatcacacatacaaattttgtatagttct |
18983092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 49 - 212
Target Start/End: Complemental strand, 8373 - 8211
Alignment:
| Q |
49 |
tttaaaataaataaccataatggattatctaacctttggttaaaattttctaattttattttgaaatttattagatcacttaatctcctctacaaatctt |
148 |
Q |
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| T |
8373 |
tttaaaataaacaaccataatggattatctaacctttggttaaaattttctaattttattttaaaatttattagatcacttaatctcctctacaaatctt |
8274 |
T |
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| Q |
149 |
gactgactttcttctttatcaaccataatccaaatggagaaacatttatataaattaaaataat |
212 |
Q |
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| T |
8273 |
gactgactttcttcttta-caaccataatccaaatggagaaacatttatataaattaaaataat |
8211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 228 - 296
Target Start/End: Complemental strand, 8161 - 8093
Alignment:
| Q |
228 |
gagtatttgttatttcttgataacgtaatattttataaattatcacacatacaaattttgtatagttct |
296 |
Q |
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| T |
8161 |
gagtatttgttatttcttgataacgtaatattttataaattatcacacatacaaattttgtatagttct |
8093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 9647 - 9600
Alignment:
| Q |
10 |
attattctattcatatgacaaattttaacatttgaattatttaaaata |
57 |
Q |
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| T |
9647 |
attattctattcatatgacaaattttaacatttgaattatttaaaata |
9600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1974 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1974
Description:
Target: scaffold1974; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 797 - 750
Alignment:
| Q |
10 |
attattctattcatatgacaaattttaacatttgaattatttaaaata |
57 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
797 |
attattctattcatatgacaaattttaacatttgaattatttaaaata |
750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1878 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1878
Description:
Target: scaffold1878; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 477 - 524
Alignment:
| Q |
10 |
attattctattcatatgacaaattttaacatttgaattatttaaaata |
57 |
Q |
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| T |
477 |
attattctattcatatgacaaattttaacatttgaattatttaaaata |
524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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