View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_87 (Length: 294)
Name: NF3726_low_87
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_87 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 279
Target Start/End: Original strand, 14261254 - 14261528
Alignment:
| Q |
10 |
acatcatcagtagtccaattagagaacgacattctaaaactttcccataagtcgggcaaaaaattcaactatcaaaataataattacaatcaatgtcttc |
109 |
Q |
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||||||||| || ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14261254 |
acatcatcaataatccaattagagaatgacattctaaaaatttcccataagtcgggcaaaaaattcaactatcaaaataatagttacaatcaatgtcttc |
14261353 |
T |
|
| Q |
110 |
ttaaatctctaggaat-----aaacatcaaaccatcaccaactatggtaattttaacaacaagagagcaaacccaaaatatgtatcccaaacaaacacaa |
204 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14261354 |
ttaaatctctaggaattgacaaaacatcaaaccatcaccaactatggtaattttaacaacaagagagcaaacccaaaatatgtatcccaaacaaacacaa |
14261453 |
T |
|
| Q |
205 |
agagaagacaaaactacttagataaattatctaaataactaaattgataacaaaattctattgtcacgctctctg |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14261454 |
agagaagacaaaactacttagataaattatctaaataactaaattgataacaaaattctaatgtcacgctctctg |
14261528 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 245
Target Start/End: Original strand, 17920592 - 17920762
Alignment:
| Q |
80 |
atcaaaataataattacaatcaatgtcttcttaaatctctaggaataaaca----tcaaaccatca-ccaactatggtaattttaacaacaagagagcaa |
174 |
Q |
| |
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|||||| |||| ||||||||||||||||| |||||||||||||| |||| ||||| |||| ||||||||| | ||| ||||||| ||||||||| |
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| T |
17920592 |
atcaaagtaatggttacaatcaatgtcttcataaatctctaggaactaacaatcatcaaataatcatccaactatgatgattctaacaactagagagcaa |
17920691 |
T |
|
| Q |
175 |
acccaaaatatgtatcccaaacaaacacaaagagaagacaaaactacttagataaattatctaaataacta |
245 |
Q |
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|| | ||||| ||||||||||||||||||| | |||||||||||||||||| ||||||||||| |||||| |
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|
| T |
17920692 |
actctaaatagatatcccaaacaaacacaaacaaaagacaaaactacttagaaaaattatctaagtaacta |
17920762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 197
Target Start/End: Complemental strand, 35905770 - 35905635
Alignment:
| Q |
66 |
caaaaaattcaactatcaaaataataattacaatcaatgtcttcttaaatctctaggaat----aaacatcaaaccatcaccaactatggtaattttaac |
161 |
Q |
| |
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|||||| ||| ||||||| |||||| ||||||||||||||||| ||||||||||| || || ||||||| ||||||||||||||| ||| |||| |
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| T |
35905770 |
caaaaacttccactatcacaataatggttacaatcaatgtcttcctaaatctctagaaactgaaaatcatcaaataatcaccaactatggtgattctaac |
35905671 |
T |
|
| Q |
162 |
aacaagagagcaaacccaaaatatgtatcccaaaca |
197 |
Q |
| |
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||| ||||||||||||| ||||| ||||||||||| |
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| T |
35905670 |
aaccagagagcaaaccctaaatagatatcccaaaca |
35905635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 223
Target Start/End: Original strand, 2764656 - 2764817
Alignment:
| Q |
66 |
caaaaaattcaactatcaaaataataattacaatcaatgtcttcttaaatctctaggaataaaca----tcaaaccatcaccaactatggtaattttaac |
161 |
Q |
| |
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|||||| ||| ||||||| |||||| |||||||||| |||||| |||||||||||||| ||| ||||| |||||||| |||||| ||| |||| |
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| T |
2764656 |
caaaaacttccactatcataataatggttacaatcaacgtcttcctaaatctctaggaaccgacagtcatcaaataatcaccaattatggtgattctaac |
2764755 |
T |
|
| Q |
162 |
aacaagagagcaaacccaaaatatgtatcccaaacaaacacaaagagaagacaaaactactt |
223 |
Q |
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||| ||||||||||| | ||||| |||| ||||||| ||||||||||||||||||||||||| |
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|
| T |
2764756 |
aaccagagagcaaactctaaataggtataccaaacagacacaaagagaagacaaaactactt |
2764817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 36966805 - 36966963
Alignment:
| Q |
101 |
aatgtcttcttaaatctctaggaat----aaacatcaaaccatcaccaactatggtaattttaacaacaagagagcaaacccaaaatatgtatcccaaac |
196 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| ||||||||||||| | ||| ||||||| | ||||||| ||||| |||||||||| |
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| T |
36966805 |
aatgtcttcttaaatctctaggaaccgacaatcatcaaataatcaccaactatgatgattctaacaaccaa----caaaccctaaatagatatcccaaac |
36966900 |
T |
|
| Q |
197 |
aaacacaaagagaagacaaaactacttagataaattatctaaataactaaattgataacaaaa |
259 |
Q |
| |
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| |||||||||||||||||||||||||||| ||||||||||| || | || | |||||||||| |
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|
| T |
36966901 |
agacacaaagagaagacaaaactacttagaaaaattatctaagtatcaaactagataacaaaa |
36966963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 2281535 - 2281442
Alignment:
| Q |
142 |
ccaactatggtaattttaacaacaagagagcaaacccaaaatatgtatcccaaacaaacacaaagagaagacaaaactacttagataaattatc |
235 |
Q |
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||||||||| | ||| ||||| | ||||||||||||| ||||| ||||| ||||| ||||||||| ||||| |||||||||||| |||||||| |
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| T |
2281535 |
ccaactatgatgattctaacagccagagagcaaaccctaaataggtatctgaaacagacacaaagaaaagaccaaactacttagaaaaattatc |
2281442 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 210
Target Start/End: Complemental strand, 55280429 - 55280281
Alignment:
| Q |
66 |
caaaaaattcaactatcaaaataataattacaatcaatgtcttcttaaatctctagga----ataaacatcaaaccatcaccaactatggtaattttaac |
161 |
Q |
| |
|
|||||| ||| |||| || |||||| ||||||||||||||||| ||||||||||||| | || ||||||| ||||||||||||||| ||| |||| |
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| T |
55280429 |
caaaaacttccactaccacaataatggttacaatcaatgtcttcataaatctctaggaactgacaatcatcaaataatcaccaactatggtgattctaac |
55280330 |
T |
|
| Q |
162 |
aacaagagagcaaacccaaaatatgtatcccaaacaaacacaaagagaa |
210 |
Q |
| |
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||| | ||| || || ||||| ||||||||| || |||||||||||| |
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|
| T |
55280329 |
aaccaaagaacagacattaaataggtatcccaaccagacacaaagagaa |
55280281 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 73157 - 73085
Alignment:
| Q |
166 |
agagagcaaacccaaaatatgtatcccaaacaaacacaaagagaagacaaaactacttagataaattatctaa |
238 |
Q |
| |
|
|||||||||| || ||| | |||||||||| | |||||||||||||||||||| | ||||| ||||||||||| |
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|
| T |
73157 |
agagagcaaatcctaaaaaggtatcccaaatagacacaaagagaagacaaaaccaattagaaaaattatctaa |
73085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 178
Target Start/End: Complemental strand, 18939735 - 18939629
Alignment:
| Q |
77 |
actatcaaaataataattacaatcaatgtcttcttaaatctctaggaat----aaacatcaaaccatcacc-aactatggtaattttaacaacaagagag |
171 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||| |||||| ||||||||| ||| ||||||| || ||| |
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| T |
18939735 |
actatcagaataatggttacaatcaatgtcttcctaaatctctaggaactgacaaacatcaaataatcacccaactatggtgattctaacaaccagggag |
18939636 |
T |
|
| Q |
172 |
caaaccc |
178 |
Q |
| |
|
|||||| |
|
|
| T |
18939635 |
aaaaccc |
18939629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 40488519 - 40488483
Alignment:
| Q |
203 |
aaagagaagacaaaactacttagataaattatctaaa |
239 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |
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|
| T |
40488519 |
aaagagaagacaaaactacttagaaaaattatctaaa |
40488483 |
T |
|
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