View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3726_low_88 (Length: 289)
Name: NF3726_low_88
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_88 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 45178904 - 45178642
Alignment:
| Q |
13 |
aatatcatgcgtacaaatcgcctcaggcattgatcagatttgtatgttgaaatggactttagatagaaaaaagaaattgatgcaggtacttaacaaatta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45178904 |
aatatcatgcgtacaaatcgcctcaggcattgatcagatttgtatgttgaaatggactttagatagaaaaaagaaattgatgcaggtacttaacaaatta |
45178805 |
T |
|
| Q |
113 |
gtatcagtatcagacaagtattcaatacaataggtaaagataatgcaagtattagtgcttcataggttgtatcaaataagatctgtgtttcnnnnnnnac |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| || |
|
|
| T |
45178804 |
gtatcagtatcaaacaagtattcaatacaataggtaaagataatgcaagtattagtgcttaataggttctatcaaataagatctgtgtttcattttttac |
45178705 |
T |
|
| Q |
213 |
atttgctactatctagaatttgtttatatagcaacaacatagttaaaacaatggatggtggtg |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45178704 |
atttgctactatctagaatttgtttatatagcaacaacatagttaaaacaatggatggtggtg |
45178642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 45168980 - 45168922
Alignment:
| Q |
135 |
caatacaataggtaaagataatgcaagtattagtgcttcataggttgtatcaaataaga |
193 |
Q |
| |
|
||||| ||||||| |||| ||||||| ||||||||||||||||||| | || ||||||| |
|
|
| T |
45168980 |
caatagaataggtgaagacaatgcaaatattagtgcttcataggttctgtccaataaga |
45168922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 24123723 - 24123768
Alignment:
| Q |
135 |
caatacaataggtaaagataatgcaagtattagtgcttcataggtt |
180 |
Q |
| |
|
||||||||||||| |||| ||||||| ||||||||||||||||||| |
|
|
| T |
24123723 |
caatacaataggtgaagacaatgcaaatattagtgcttcataggtt |
24123768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University