View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_89 (Length: 282)
Name: NF3726_low_89
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_89 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 264
Target Start/End: Complemental strand, 39370687 - 39370437
Alignment:
| Q |
14 |
cacagacaaaacatagtactttttcccatcaatcacaggtgttgaagtttcaaggatgtttgctgtagctacagcattcggatcgaaaccaccctgagga |
113 |
Q |
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| T |
39370687 |
cacagacaaaacatagtactttttcccatcaatcacaggcgttgaagtttcaaggatgtttgctgtagctacagcattcggatcgaaaccaccctgagga |
39370588 |
T |
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| Q |
114 |
tttcaagttcatactcagttaggatataagcaaaagcaataattttgaaattttgacacgaaaatttgacaacactttagatggttagcttatctcaaat |
213 |
Q |
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| T |
39370587 |
tttcaagttcatactcagttaggatataagcaaaagcaataattttgaaattttgacacgaaaatttgacaacactttagatggttagcgcatctcaaat |
39370488 |
T |
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| Q |
214 |
atatagttaattatgtacagtggatggttaatgaaaataacaaagcgttgc |
264 |
Q |
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| T |
39370487 |
atattggtaattatgtacagtggatggttaatgaatataacaaagcgttgc |
39370437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 17105548 - 17105454
Alignment:
| Q |
30 |
tactttttcccatcaatcacaggtgttgaagtttcaaggatgtttgctgtagctacagcattcggatcgaaaccaccctgaggatttcaagttca |
124 |
Q |
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| T |
17105548 |
tactgtttcccaccaatcactggtgctgaactctctaagatgtttgccacagctacggcatttgtatcaaaaccaccctgaggaattcaagttca |
17105454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 4364249 - 4364327
Alignment:
| Q |
178 |
tttgacaacactttagatggttagcttatctcaaatatatagttaattatgtacagtggatggttaatgaaaataacaa |
256 |
Q |
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| T |
4364249 |
tttgacaacaatttagatagttaacgcaattcaaatatgtagttaattatgttcagtgatcggttaatgaaaataacaa |
4364327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 52910183 - 52910143
Alignment:
| Q |
208 |
tcaaatatatagttaattatgtacagtggatggttaatgaa |
248 |
Q |
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| T |
52910183 |
tcaaatatacggttaattatgtccagtggatggttaatgaa |
52910143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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