View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_95 (Length: 272)
Name: NF3726_low_95
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_95 |
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Alignment Details
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 44087944 - 44088054
Alignment:
| Q |
125 |
tagaggtgttaaatgggctggcccgacccaacccgattggcccgactatctaaatgggtcagcctggcccaacccatttttatttgggccacaaattcta |
224 |
Q |
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| T |
44087944 |
tagaggtgtcaaatgggctggcccgacccagcccgtgtggaccaactatataaatgggtcagcccggcccagcccatttataattgggctgcatattcta |
44088043 |
T |
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| Q |
225 |
gagcccagccc |
235 |
Q |
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| T |
44088044 |
gagcccggccc |
44088054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 44089205 - 44089115
Alignment:
| Q |
163 |
ggcccgactatctaaatgggtcagcctggcccaacccatttttatttgggccacaaattctagagcccagcccaccctgtgtgggccatgg |
253 |
Q |
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| T |
44089205 |
ggcccgactatataaatgggccagtctggcccaacccatttataattgggccataaattctatggccctgcccagtctgtgtgggccatgg |
44089115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 38992013 - 38992100
Alignment:
| Q |
163 |
ggcccgactatctaaatgggtcagcctggcccaacccatttttatttgggccacaaattctagagcccagcccaccctgtgtgggcca |
250 |
Q |
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| T |
38992013 |
ggcccgactacataaatgggccagcccggcccaactcatttataatagggccacaaattctagagcctggcccggcatgtgtgggcca |
38992100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 13099338 - 13099247
Alignment:
| Q |
161 |
ttggcccgactatctaaatgggtcagcctggcccaacccatttttatttgggccacaaattctagagcccagcccaccctgtgtgggccatg |
252 |
Q |
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| T |
13099338 |
ttggccctactatataaatgggtcagcccaacccaaccaatttataattgggccgcaaattctagagcccggcccagcccatgtgggccatg |
13099247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 253
Target Start/End: Complemental strand, 25019166 - 25019088
Alignment:
| Q |
175 |
taaatgggtcagcctggcccaacccatttttatttgggccacaaattctagagcccagcccaccctgtgtgggccatgg |
253 |
Q |
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| T |
25019166 |
taaatgggccagcctggcccgacccatttataattgggccacatattcttgagcccaacctggcctgtgtggggcatgg |
25019088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 235
Target Start/End: Complemental strand, 25063030 - 25062987
Alignment:
| Q |
192 |
cccaacccatttttatttgggccacaaattctagagcccagccc |
235 |
Q |
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| T |
25063030 |
cccaacccatttatatttgggccacaaattctagagcccagccc |
25062987 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 253
Target Start/End: Original strand, 41200515 - 41200603
Alignment:
| Q |
165 |
cccgactatctaaatgggtcagcctggcccaacccatttttatttgggccacaaattctagagcccagcccaccctgtgtgggccatgg |
253 |
Q |
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| T |
41200515 |
cccgactacataaatgggtcagcccgacccgactcaattataattgggccgcatattctagaacccagcccggcctgtgtgggccatgg |
41200603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 29322820 - 29322890
Alignment:
| Q |
125 |
tagaggtgttaaatgggctggcccgacccaa-cccgattggcccgactatctaaatgggtcagcctggccc |
194 |
Q |
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| T |
29322820 |
tagaggtgtcaaatgggccggcccggcccaagcccgagaggcccgactatagaaatgggtcagcccggccc |
29322890 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 8222700 - 8222765
Alignment:
| Q |
125 |
tagaggtgttaaatgggctggcccgacccaacccgatt--ggcccgactatctaaatgggtcagcc |
188 |
Q |
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| T |
8222700 |
tagagctgtcaaatgggccggcccggcccaacccgatttgggcccgactatagaaatgggtcagcc |
8222765 |
T |
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