View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3726_low_99 (Length: 266)
Name: NF3726_low_99
Description: NF3726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3726_low_99 |
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| [»] scaffold0155 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 42394149 - 42394400
Alignment:
| Q |
1 |
agctgcaccatctccgctgctgtcttcctaaactccgctcctaagctctccctctctccgtcctccatcgccgcaccccacatcatattagtaatcacgt |
100 |
Q |
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| T |
42394149 |
agctgcaccatctctgctgctgtcttcctaaattccgctcctaagctctccctctcaccgtcctccatcgccgcaccccacatcatattagtaatcacgt |
42394248 |
T |
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| Q |
101 |
ttaacaccgtcaaaaacacttgctccccaacattcaccgttgatccggcacagttgtgaatatactctaccattttccgaacctcaccacggcggagttc |
200 |
Q |
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| T |
42394249 |
tcaacaccgtcaaaaacacttgctccccaacactcaccgttgatccggcacagttgtgaatatactctaccattttccgaacctcaccacggcggagttc |
42394348 |
T |
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| Q |
201 |
gtagactgaatcaagacttttattgctaagcatcttcaccacacaaactttc |
252 |
Q |
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| T |
42394349 |
gtagactgaatcaagacttttattgctaagcatcttcaccacacaaactttc |
42394400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 42378234 - 42378478
Alignment:
| Q |
1 |
agctgcaccatctccgctgctgtcttcctaaactccgctcctaagctctccctctctccgtcctccatcgccgcaccccacatcatattagtaatcacgt |
100 |
Q |
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||||||||||||||||| | | || |||||||||||| ||||| |||||||||||| | | |||| | ||||||||||||||||||| |||||||| | |
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| T |
42378234 |
agctgcaccatctccgccaccgcctccctaaactccgcccctaaactctccctctcttctccttccacccccgcaccccacatcatattcgtaatcacat |
42378333 |
T |
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| Q |
101 |
ttaacaccgtcaaaaacacttgctccccaacattcaccgttgatccggcacagttgtgaatatactctaccattttccgaacctcaccacggcggagttc |
200 |
Q |
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| T |
42378334 |
tcaacaccgttaaaaaaacctgctcaccaacattcaccgttgaccctacccgatcatgaatatacccgaccgttttccgaacctcacctcgtcggagctc |
42378433 |
T |
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| Q |
201 |
gtagactgaatcaagacttttattgctaagcatcttcaccacaca |
245 |
Q |
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| T |
42378434 |
gtaaacggagtcaagagttgtgttactaagcatcttcacgacaca |
42378478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 224 - 290
Alignment:
| Q |
186 |
accacggcggagttcgtagactgaatcaagacttttattgctaagcatcttcaccacacaaactttc |
252 |
Q |
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| T |
224 |
accacggcggagttcatacactgaatcaagacttttattgctaagcatcttcaccacacaaactttc |
290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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