View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3727-Insertion-1 (Length: 1165)

Name: NF3727-Insertion-1
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3727-Insertion-1
NF3727-Insertion-1
[»] chr8 (29 HSPs)
chr8 (772-1013)||(9669429-9669672)
chr8 (366-553)||(9671618-9671802)
chr8 (772-902)||(9684946-9685076)
chr8 (86-146)||(40372323-40372383)
chr8 (557-682)||(9669693-9669818)
chr8 (77-148)||(43295962-43296033)
chr8 (594-682)||(9688985-9689073)
chr8 (75-147)||(43295881-43295953)
chr8 (98-148)||(39910480-39910530)
chr8 (77-146)||(43483928-43483996)
chr8 (265-321)||(9670188-9670244)
chr8 (76-146)||(34540741-34540811)
chr8 (565-662)||(9685198-9685295)
chr8 (108-148)||(24418954-24418994)
chr8 (111-147)||(32484970-32485006)
chr8 (75-147)||(43484007-43484078)
chr8 (77-148)||(1875684-1875754)
chr8 (923-1015)||(9688877-9688971)
chr8 (111-146)||(28882693-28882728)
chr8 (76-147)||(34540660-34540730)
chr8 (107-142)||(36308071-36308106)
chr8 (77-147)||(17457567-17457637)
chr8 (114-148)||(21435701-21435735)
chr8 (82-148)||(32241749-32241814)
chr8 (77-147)||(34188393-34188462)
chr8 (75-104)||(112010-112039)
chr8 (429-458)||(9685402-9685431)
chr8 (103-144)||(37989783-37989824)
chr8 (77-146)||(42631775-42631843)
[»] chr6 (11 HSPs)
chr6 (76-147)||(33122930-33123001)
chr6 (77-141)||(3673853-3673917)
chr6 (86-149)||(17182546-17182609)
chr6 (80-148)||(17182616-17182684)
chr6 (85-148)||(7358934-7358996)
chr6 (76-146)||(33122849-33122919)
chr6 (75-143)||(7358853-7358921)
chr6 (106-146)||(29168561-29168601)
chr6 (91-146)||(6048032-6048087)
chr6 (73-147)||(9908128-9908201)
chr6 (110-148)||(17773529-17773567)
[»] chr4 (31 HSPs)
chr4 (72-147)||(3435225-3435300)
chr4 (77-148)||(41554069-41554140)
chr4 (77-148)||(3435145-3435216)
chr4 (77-148)||(41553990-41554061)
chr4 (82-147)||(35820525-35820590)
chr4 (76-146)||(44639822-44639891)
chr4 (77-148)||(46462454-46462525)
chr4 (93-148)||(49249896-49249951)
chr4 (110-148)||(19934666-19934704)
chr4 (77-147)||(25124703-25124773)
chr4 (76-146)||(42183155-42183225)
chr4 (110-148)||(54164841-54164879)
chr4 (77-146)||(46462375-46462444)
chr4 (89-146)||(49926844-49926901)
chr4 (108-148)||(35005129-35005169)
chr4 (113-148)||(25700531-25700566)
chr4 (81-148)||(33118272-33118339)
chr4 (113-148)||(37255713-37255748)
chr4 (108-143)||(37255760-37255795)
chr4 (113-147)||(19934713-19934747)
chr4 (110-148)||(29006909-29006947)
chr4 (113-147)||(54164888-54164922)
chr4 (77-146)||(9968297-9968365)
chr4 (111-148)||(20814603-20814640)
chr4 (111-148)||(21586992-21587029)
chr4 (111-148)||(31089960-31089997)
chr4 (75-148)||(42013140-42013212)
chr4 (93-146)||(43635848-43635900)
chr4 (77-146)||(50038446-50038514)
chr4 (77-146)||(50045668-50045736)
chr4 (75-148)||(51126099-51126171)
[»] chr1 (39 HSPs)
chr1 (77-144)||(47507645-47507711)
chr1 (76-147)||(29070692-29070763)
chr1 (77-143)||(41562992-41563058)
chr1 (77-147)||(47507559-47507629)
chr1 (76-140)||(14442405-14442469)
chr1 (77-148)||(29070612-29070683)
chr1 (77-148)||(52826206-52826277)
chr1 (93-155)||(11322427-11322489)
chr1 (93-155)||(11480448-11480510)
chr1 (86-146)||(41563073-41563133)
chr1 (76-136)||(49317045-49317105)
chr1 (77-146)||(49586241-49586311)
chr1 (75-144)||(34184512-34184581)
chr1 (108-148)||(10256807-10256847)
chr1 (84-148)||(34184436-34184500)
chr1 (77-148)||(49586321-49586392)
chr1 (98-148)||(34500165-34500215)
chr1 (88-154)||(52826139-52826205)
chr1 (111-148)||(5431414-5431451)
chr1 (107-148)||(19175613-19175654)
chr1 (76-112)||(11322399-11322435)
chr1 (76-112)||(11480420-11480456)
chr1 (108-148)||(34597546-34597586)
chr1 (108-148)||(34597587-34597627)
chr1 (108-148)||(52112902-52112942)
chr1 (107-147)||(52923348-52923388)
chr1 (111-150)||(6156663-6156702)
chr1 (111-146)||(19175664-19175699)
chr1 (93-144)||(29797850-29797901)
chr1 (76-147)||(37255121-37255191)
chr1 (150-189)||(41562992-41563031)
chr1 (77-148)||(49316949-49317020)
chr1 (74-145)||(52879992-52880062)
chr1 (114-148)||(8984220-8984254)
chr1 (114-148)||(15351789-15351823)
chr1 (74-148)||(26924291-26924365)
chr1 (114-148)||(38468718-38468752)
chr1 (103-144)||(37096176-37096217)
chr1 (111-148)||(39940560-39940597)
[»] scaffold0014 (2 HSPs)
scaffold0014 (77-148)||(133211-133282)
scaffold0014 (76-140)||(133131-133195)
[»] chr3 (27 HSPs)
chr3 (77-148)||(39009830-39009901)
chr3 (85-148)||(43493795-43493858)
chr3 (77-143)||(35504868-35504934)
chr3 (77-147)||(53739518-53739588)
chr3 (76-148)||(53739437-53739509)
chr3 (76-139)||(30675078-30675141)
chr3 (85-144)||(48287990-48288049)
chr3 (77-150)||(45502783-45502856)
chr3 (77-148)||(46890401-46890472)
chr3 (77-148)||(14593854-14593925)
chr3 (83-142)||(35504805-35504863)
chr3 (77-148)||(45502712-45502783)
chr3 (86-148)||(19227159-19227221)
chr3 (77-131)||(39009903-39009957)
chr3 (111-148)||(39836939-39836976)
chr3 (114-148)||(2128435-2128469)
chr3 (77-147)||(24599954-24600023)
chr3 (114-148)||(26367549-26367583)
chr3 (114-148)||(27707252-27707286)
chr3 (77-143)||(36458709-36458774)
chr3 (111-148)||(105445-105482)
chr3 (74-143)||(12569181-12569249)
chr3 (74-143)||(13545645-13545713)
chr3 (111-148)||(29241554-29241591)
chr3 (111-148)||(39964324-39964361)
chr3 (82-147)||(43493871-43493936)
chr3 (113-146)||(45819559-45819592)
[»] chr2 (13 HSPs)
chr2 (76-147)||(25312456-25312527)
chr2 (77-147)||(23962268-23962338)
chr2 (76-140)||(23962355-23962419)
chr2 (77-140)||(25312544-25312607)
chr2 (111-148)||(27964313-27964350)
chr2 (108-149)||(44274614-44274655)
chr2 (87-126)||(1204458-1204497)
chr2 (108-143)||(41824287-41824322)
chr2 (98-148)||(35024354-35024404)
chr2 (84-146)||(43341131-43341193)
chr2 (114-143)||(17866259-17866288)
chr2 (111-148)||(41824334-41824371)
chr2 (77-146)||(42579095-42579163)
[»] scaffold0263 (2 HSPs)
scaffold0263 (84-146)||(19869-19931)
scaffold0263 (106-148)||(19817-19859)
[»] scaffold0018 (1 HSPs)
scaffold0018 (77-189)||(153940-154055)
[»] chr7 (18 HSPs)
chr7 (75-148)||(5977905-5977978)
chr7 (75-148)||(27115309-27115382)
chr7 (77-148)||(5977826-5977897)
chr7 (80-147)||(33628771-33628838)
chr7 (75-148)||(31741954-31742027)
chr7 (114-148)||(26385657-26385691)
chr7 (80-148)||(9487096-9487164)
chr7 (108-148)||(11602841-11602881)
chr7 (77-148)||(8269934-8270004)
chr7 (91-146)||(13040753-13040808)
chr7 (108-143)||(34840640-34840675)
chr7 (114-144)||(22752638-22752668)
chr7 (111-148)||(8169170-8169207)
chr7 (111-148)||(12274883-12274920)
chr7 (114-147)||(28321596-28321629)
chr7 (106-143)||(28409596-28409633)
chr7 (107-148)||(38238809-38238850)
chr7 (114-147)||(47535045-47535078)
[»] scaffold1266 (2 HSPs)
scaffold1266 (83-146)||(131-194)
scaffold1266 (84-148)||(204-268)
[»] chr5 (31 HSPs)
chr5 (76-147)||(884953-885024)
chr5 (75-148)||(6279403-6279476)
chr5 (80-148)||(22012589-22012657)
chr5 (76-143)||(6271917-6271984)
chr5 (80-147)||(6279485-6279551)
chr5 (86-133)||(22012668-22012715)
chr5 (78-148)||(27385542-27385612)
chr5 (75-148)||(19216360-19216433)
chr5 (75-147)||(19216279-19216351)
chr5 (89-148)||(24089116-24089175)
chr5 (76-146)||(10495205-10495275)
chr5 (77-134)||(884873-884930)
chr5 (111-148)||(1098657-1098694)
chr5 (84-141)||(35099594-35099651)
chr5 (76-148)||(12295750-12295822)
chr5 (111-147)||(29807151-29807187)
chr5 (114-146)||(42958632-42958664)
chr5 (77-148)||(919641-919712)
chr5 (76-147)||(14064805-14064875)
chr5 (114-149)||(31691291-31691326)
chr5 (111-146)||(31947479-31947514)
chr5 (77-143)||(20361973-20362038)
chr5 (77-147)||(24089037-24089107)
chr5 (114-148)||(25408617-25408651)
chr5 (106-148)||(27385492-27385534)
chr5 (114-148)||(30893850-30893884)
chr5 (76-146)||(39126090-39126159)
chr5 (75-148)||(1023724-1023797)
chr5 (75-140)||(16052634-16052699)
chr5 (111-148)||(29807107-29807144)
chr5 (107-144)||(43506172-43506209)
[»] scaffold0012 (1 HSPs)
scaffold0012 (77-148)||(42514-42585)
[»] scaffold0002 (1 HSPs)
scaffold0002 (79-144)||(120297-120362)


Alignment Details
Target: chr8 (Bit Score: 97; Significance: 4e-47; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 772 - 1013
Target Start/End: Complemental strand, 9669672 - 9669429
Alignment:
Q  772 aagaggcggacagctgagattgaagcagatattgctgaccaccgtcgtcagattgttttgctggagaaaaaactggatatggagatagttgaggttgaga 871  Q
    ||||||||||  || ||||||||||||| ||| ||| |||||||| |||||||||| |||||||||||||| ||||| |  ||||||| ||||||||| |    
T  9669672 aagaggcggatggcagagattgaagcagttatcgcttaccaccgtggtcagattgtgttgctggagaaaaagctggagaatgagatagctgaggttgaaa 9669573  T
Q  872 gttgttatctcccagcttctcagtatgttccattggacgagccggaattattgaagagatg-tataatatgtatgttgct-agactattaggcgtggagg 969  Q
    ||||||||||||||||||||||||||||||| ||||| ||||  ||  ||||||||||||| ||| |||||||||||||| ||||||||| | ||  ||     
T  9669572 gttgttatctcccagcttctcagtatgttccgttggatgagcaagagctattgaagagatgctatgatatgtatgttgctgagactattaagagt-aagt 9669474  T
Q  970 agaaggtgaaggagtt-gatcaggagctgattgagtatagtaagt 1013  Q
     ||||||||||||||| || |||||||||||||||| || |||||    
T  9669473 tgaaggtgaaggagttggaccaggagctgattgagtttattaagt 9669429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 366 - 553
Target Start/End: Complemental strand, 9671802 - 9671618
Alignment:
Q  366 tactgcctataaggatctctctgaagatctaagagaggtcctccaacacttgcggtacacggtcgacattccagttcaaacttggacaacaacccagctc 465  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||  ||||| |  || |||||||||||||||||||||||||||| ||||     
T  9671802 tactgcctataaggatctctctgaagatctaagacgggtcctccaacacttggagtacatgaccggcattccagttcaaacttggacaacaaccgagcta 9671703  T
Q  466 gcgcgacactttataacaacagagagtttcattgaaaatgtcaaaacattcaatcttatcaatatggaagttttgccttacaatgtat 553  Q
    || ||| |||||||   |||||||||||| ||  |||||||||||||| ||| | ||||||||||| ||||| | |||||| ||||||    
T  9671702 gcacgaaactttat---aacagagagtttaataaaaaatgtcaaaacaatcacttttatcaatatgaaagttgtcccttacgatgtat 9671618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 772 - 902
Target Start/End: Complemental strand, 9685076 - 9684946
Alignment:
Q  772 aagaggcggacagctgagattgaagcagatattgctgaccaccgtcgtcagattgttttgctggagaaaaaactggatatggagatagttgaggttgaga 871  Q
    |||||||||| ||  ||||||||||| ||||| |||||  | | |||||||||||| |||||||||| ||||||||| |  ||||||||||||||  |||    
T  9685076 aagaggcggagagtggagattgaagctgatatcgctgaaaaacatcgtcagattgtgttgctggagagaaaactggagaccgagatagttgaggtcaaga 9684977  T
Q  872 gttgttatctcccagcttctcagtatgttcc 902  Q
    | |||||| ||||||||||| ||||||||||    
T  9684976 gatgttatgtcccagcttctaagtatgttcc 9684946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 40372383 - 40372323
Alignment:
Q  86 cggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40372383 cggtctcaaatgtaagaaatttttcactttttaggttcattcaataaattatgtatgtggt 40372323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 557 - 682
Target Start/End: Complemental strand, 9669818 - 9669693
Alignment:
Q  557 ccttggcgattcaacatggtttctggactgatcactgtaaatgtactctcacaaccatgatgaagttttgtaacttcctcaaatcaaaacaagggtctga 656  Q
    ||||||||||||||| |||||||||| || |  || |||||||||||| ||| || ||||||||||| |||  ||| |||||||| ||| |||||||| |    
T  9669818 ccttggcgattcaacgtggtttctgggctcaaaacagtaaatgtactcccacgacaatgatgaagttctgttcctttctcaaatccaaagaagggtctca 9669719  T
Q  657 aatcctcactaattttcagaagaaag 682  Q
    |||||||  | |||||||||||||||    
T  9669718 aatcctcgatgattttcagaagaaag 9669693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 43296033 - 43295962
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||| ||| ||||||||| || ||||||||||||| ||||||||||||||| |||||||||||||    
T  43296033 tactccctccgatctcaaatgtaagcaacttttcactttttaaattcattcaataaatgatgtatgtggtct 43295962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 594 - 682
Target Start/End: Complemental strand, 9689073 - 9688985
Alignment:
Q  594 taaatgtactctcacaaccatgatgaagttttgtaacttcctcaaatcaaaacaagggtctgaaatcctcactaattttcagaagaaag 682  Q
    ||||||||||| || ||| ||||||||||| ||||||||||||||||| ||| |||||||| ||||||||  | || ||||||||||||    
T  9689073 taaatgtactcccataacaatgatgaagttatgtaacttcctcaaatccaaagaagggtctcaaatcctcgatgatattcagaagaaag 9688985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 43295881 - 43295953
Alignment:
Q  75 aatactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    |||||||||||||||| |||||||||  || ||||||| ||||||||||||||||| ||| ||||||||||||    
T  43295881 aatactccctccggtcgtaaatgtaaacaacttttcacattttagattcattcaatgaatgatgtatgtggtc 43295953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 39910480 - 39910530
Alignment:
Q  98 taagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||| |||||||||||||||||||||||| ||||||| |||||||||||||    
T  39910480 taagcaatttttcactttttagattcattgaataaataatgtatgtggtct 39910530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 43483928 - 43483996
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    ||||||||||| |||||||| |||| || ||| ||||||||||||||||||||| ||| |||||||||||    
T  43483928 tactccctccgttcttaaatataagcaaattt-cactttttagattcattcaattaatgatgtatgtggt 43483996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 9670244 - 9670188
Alignment:
Q  265 tgaatatgcacaggttatttagatttgcatttaactaaattcattgataagtgtaaa 321  Q
    |||| ||||||| ||| ||||||||||||||||| |||||| |||||||||||||||    
T  9670244 tgaaaatgcacacgttttttagatttgcatttaattaaatttattgataagtgtaaa 9670188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 34540811 - 34540741
Alignment:
Q  76 atactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    |||||||||||||||| ||||| ||| || |||| |||||| || |||||| ||||||| |||||||||||    
T  34540811 atactccctccggtctcaaatggaagcaactttttacttttgaggttcatttaataaatgatgtatgtggt 34540741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 565 - 662
Target Start/End: Complemental strand, 9685295 - 9685198
Alignment:
Q  565 attcaacatggtttctggactgatcactgtaaatgtactctcacaaccatgatgaagttttgtaacttcctcaaatcaaaacaagggtctgaaatcct 662  Q
    |||||||  ||||||||||||||  || || | |||||||  | ||||||||||||||| ||| ||||||||||||| ||  |||||||| |||||||    
T  9685295 attcaacgcggtttctggactgaaaacagtcattgtactccaaaaaccatgatgaagttctgtgacttcctcaaatccaatgaagggtctaaaatcct 9685198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 24418994 - 24418954
Alignment:
Q  108 ttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||||||||||||||| |||||||| ||||    
T  24418994 ttcactttttagattcattcaataaatgatgtatgtcgtct 24418954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 32484970 - 32485006
Alignment:
Q  111 actttttagattcattcaataaattatgtatgtggtc 147  Q
    |||||||||||||||||||| ||||||||||||||||    
T  32484970 actttttagattcattcaattaattatgtatgtggtc 32485006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 43484078 - 43484007
Alignment:
Q  75 aatactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    ||||||||||||| | |||||| |||| || |||| ||||||||| |||||||||| ||| ||||||||||||    
T  43484078 aatactccctccgtttttaaatataagcaaatttt-actttttaggttcattcaattaatgatgtatgtggtc 43484007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 1875684 - 1875754
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||||||||| ||||| |||| || |||  ||||||||| |||||||||| ||| |||||||||||||    
T  1875684 tactccctccggtcctaaatataagcaaatttg-actttttaggttcattcaattaatgatgtatgtggtct 1875754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 923 - 1015
Target Start/End: Complemental strand, 9688971 - 9688877
Alignment:
Q  923 tgaagagatgt-ataatatgtatgttgct-agactattaggcgtggaggagaaggtgaaggagtt-gatcaggagctgattgagtatagtaagtct 1015  Q
    ||||||||||| |||| |||||||||||  ||||||||| | ||| ||||||||||||||  ||| ||||||||||||||||||| || |||||||    
T  9688971 tgaagagatgttataacatgtatgttgcccagactattaagagtg-aggagaaggtgaagttgttagatcaggagctgattgagtttattaagtct 9688877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 146
Target Start/End: Original strand, 28882693 - 28882728
Alignment:
Q  111 actttttagattcattcaataaattatgtatgtggt 146  Q
    |||||||||||||||||||||||| |||||||||||    
T  28882693 actttttagattcattcaataaatgatgtatgtggt 28882728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 34540660 - 34540730
Alignment:
Q  76 atactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    ||||||||| |||||| ||||||||| || ||| |||||||  | |||||||||||||||||| ||||||||    
T  34540660 atactcccttcggtctcaaatgtaagtaactttacacttttatg-ttcattcaataaattatgaatgtggtc 34540730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 142
Target Start/End: Complemental strand, 36308106 - 36308071
Alignment:
Q  107 tttcactttttagattcattcaataaattatgtatg 142  Q
    |||||||||||||||||||||||||||| |||||||    
T  36308106 tttcactttttagattcattcaataaatgatgtatg 36308071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 17457637 - 17457567
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    ||||||||||| ||||||||||||| |   ||||| ||||||| |||| ||| ||||| ||||||||||||    
T  17457637 tactccctccgatcttaaatgtaagcagcgtttcattttttaggttcactcagtaaatgatgtatgtggtc 17457567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 148
Target Start/End: Original strand, 21435701 - 21435735
Alignment:
Q  114 ttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||| |||||||||||||||||||||||||||||    
T  21435701 ttttaaattcattcaataaattatgtatgtggtct 21435735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 32241749 - 32241814
Alignment:
Q  82 cctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||| |||||||| |||  || |||| ||||||||| |||||||||| |||||||||||||||||    
T  32241749 cctccgttcttaaatataaacaaatttt-actttttaggttcattcaattaattatgtatgtggtct 32241814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 34188462 - 34188393
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    ||||||||||| |||||||| |||  || |||| ||||||||| |||||||||| ||| ||||||||||||    
T  34188462 tactccctccgttcttaaatataaataaatttt-actttttaggttcattcaattaatgatgtatgtggtc 34188393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 104
Target Start/End: Complemental strand, 112039 - 112010
Alignment:
Q  75 aatactccctccggtcttaaatgtaagaaa 104  Q
    ||||||||||||||||||||||||||||||    
T  112039 aatactccctccggtcttaaatgtaagaaa 112010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 429 - 458
Target Start/End: Complemental strand, 9685431 - 9685402
Alignment:
Q  429 cgacattccagttcaaacttggacaacaac 458  Q
    ||||||||||||||||||||||||||||||    
T  9685431 cgacattccagttcaaacttggacaacaac 9685402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 37989824 - 37989783
Alignment:
Q  103 aatttttcactttttagattcattcaataaattatgtatgtg 144  Q
    |||||||||| ||||||||||||| ||||||| |||||||||    
T  37989824 aatttttcaccttttagattcattgaataaatgatgtatgtg 37989783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 42631775 - 42631843
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    ||||||||||| |  ||||| |||| || |||| |||||||||||||||||||| ||| |||||||||||    
T  42631775 tactccctccgtttctaaatataagcaaatttt-actttttagattcattcaattaatgatgtatgtggt 42631843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 1e-22; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 33123001 - 33122930
Alignment:
Q  76 atactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||    
T  33123001 atactccctccgatcttaaatgtaagaaatttttcactttttagattcatttaataaatgatgcatgtggtc 33122930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 3673917 - 3673853
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtat 141  Q
    ||||||||||||||| |||||||||  | ||||||||||||||||||||||||||||| ||||||    
T  3673917 tactccctccggtctcaaatgtaagcgacttttcactttttagattcattcaataaatgatgtat 3673853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 17182546 - 17182609
Alignment:
Q  86 cggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtctg 149  Q
    |||||| ||||||||| || |||||||||||||| |||||||||||||| ||||| ||||||||    
T  17182546 cggtctcaaatgtaagtaacttttcactttttaggttcattcaataaatgatgtacgtggtctg 17182609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 17182684 - 17182616
Alignment:
Q  80 tccctccggtcttaaatgtaagaaatttttcact-ttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||||||| ||||||||| || |||||||| ||||||||||||| |||||| ||||||||||||||    
T  17182684 tccctccggtctgaaatgtaagcaacttttcacttttttagattcatttaataaa-tatgtatgtggtct 17182616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 7358996 - 7358934
Alignment:
Q  85 ccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||| ||||||||| || |||||||||||||| |||||||||||| | |||||||||||||    
T  7358996 ccggtctcaaatgtaagcaacttttcactttttag-ttcattcaataattgatgtatgtggtct 7358934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 33122849 - 33122919
Alignment:
Q  76 atactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    ||||||||||||||||| ||||||| ||| |||| | ||||||| | |||||||||||| |||||| ||||    
T  33122849 atactccctccggtcttcaatgtaataaactttttattttttaggtccattcaataaatgatgtatttggt 33122919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 143
Target Start/End: Original strand, 7358853 - 7358921
Alignment:
Q  75 aatactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgt 143  Q
    ||||||||||| ||| | ||||||||| || |||||||||||| | |||||||||||||| ||| ||||    
T  7358853 aatactccctctggtatcaaatgtaagtaacttttcacttttttggttcattcaataaataatgcatgt 7358921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 29168601 - 29168561
Alignment:
Q  106 ttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  29168601 ttttcaccttttagattcattgaataaattatgtatgtggt 29168561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 6048087 - 6048032
Alignment:
Q  91 ttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    |||| ||||||||| ||||  ||||||||||||||||||| ||| |||||||||||    
T  6048087 ttaattgtaagaaaattttgtctttttagattcattcaattaatgatgtatgtggt 6048032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 9908128 - 9908201
Alignment:
Q  73 ctaatactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    ||||||||||||||| ||  |||| |||| || |||| ||||||||| |||||||||| ||| ||||||||||||    
T  9908128 ctaatactccctccgttccaaaatataagcaaatttt-actttttaggttcattcaatcaatgatgtatgtggtc 9908201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 17773529 - 17773567
Alignment:
Q  110 cactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||||||| |||||||||||| |||||||||||||    
T  17773529 cactttttagatacattcaataaatgatgtatgtggtct 17773567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 1e-22; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 3435300 - 3435225
Alignment:
Q  72 tctaatactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    |||||||||||||||||||| ||||||||| || |||||||||||||| |||||||||||||||||| ||||||||    
T  3435300 tctaatactccctccggtctcaaatgtaagcaacttttcactttttaggttcattcaataaattatgaatgtggtc 3435225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 41554140 - 41554069
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||| |||||| ||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||    
T  41554140 tactcccttcggtctcaaatgtaagcaatttttcactttttaggttcattcaataaatcatgtatgtagtct 41554069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 3435145 - 3435216
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||||| |||| ||||||||| || ||||||||||| || |||||||||||||| |||||||||||||    
T  3435145 tactccctccagtctcaaatgtaagcaacttttcacttttgaggttcattcaataaataatgtatgtggtct 3435216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 41553990 - 41554061
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||||| | |||| || |||||||||||||    
T  41553990 tactccctccggtctaaaatgtaagcaaattttcactttttagattcactaaatagatgatgtatgtggtct 41554061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 35820525 - 35820590
Alignment:
Q  82 cctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    |||||||||| ||||||||| || |||||||||||||| |||||||||||||  ||||||||||||    
T  35820525 cctccggtctcaaatgtaagcaacttttcactttttaggttcattcaataaaggatgtatgtggtc 35820590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 44639891 - 44639822
Alignment:
Q  76 atactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    |||||||||||| |||||||| |||| || ||| ||||||||||||||||||||| ||| |||||||||||    
T  44639891 atactccctccgttcttaaatataagcaaattt-cactttttagattcattcaattaatgatgtatgtggt 44639822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 46462525 - 46462454
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||||||| || || | |||| ||||||||||||||||| |||||| ||||||| |||||||| ||||    
T  46462525 tactccctccggcctcaattataagcaatttttcactttttaggttcattgaataaatgatgtatgtagtct 46462454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 49249896 - 49249951
Alignment:
Q  93 aaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||||||||||||||| |||||  ||||||| |||||||| ||||    
T  49249896 aaatgtaagaaatttttcactttttaggttcatctaataaatgatgtatgttgtct 49249951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 19934666 - 19934704
Alignment:
Q  110 cactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  19934666 cactttttagattcattcaataaatgatgtatgtggtct 19934704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 25124703 - 25124773
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    |||||||||| || | ||||||||  |  |||||||||||||| || ||||||||||||||||||||||||    
T  25124703 tactccctccagtttcaaatgtaaagagcttttcactttttaggtttattcaataaattatgtatgtggtc 25124773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 42183155 - 42183225
Alignment:
Q  76 atactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    |||||||||||||| | ||||||||  ||||||| ||||||||  |||||||||||||| ||||| |||||    
T  42183155 atactccctccggtttcaaatgtaatcaattttttactttttaagttcattcaataaataatgtacgtggt 42183225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 54164841 - 54164879
Alignment:
Q  110 cactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  54164841 cactttttagattcattcaataaatgatgtatgtggtct 54164879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 46462375 - 46462444
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    |||||| |||| |||||| | |||| || ||||||||||||||||||||| ||||||| |||||| ||||    
T  46462375 tactccatccgatcttaattataagcaacttttcactttttagattcattaaataaatgatgtatatggt 46462444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 49926901 - 49926844
Alignment:
Q  89 tcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    ||||||||||||||||||||||||||| ||  |||||| ||||||| | |||||||||    
T  49926901 tcttaaatgtaagaaatttttcactttataagttcatttaataaataaagtatgtggt 49926844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 35005169 - 35005129
Alignment:
Q  108 ttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  35005169 ttcaatttttagattcattcaataaataatgtatgtggtct 35005129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 148
Target Start/End: Complemental strand, 25700566 - 25700531
Alignment:
Q  113 tttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||||||||||||||||| |||||||||||||    
T  25700566 tttttagattcattcaataaatgatgtatgtggtct 25700531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 33118339 - 33118272
Alignment:
Q  81 ccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||| |||| ||||||||| || |||| ||||||||| |||| ||||| ||| |||||||||||||    
T  33118339 ccctccagtctcaaatgtaagcaactttttactttttaggttcaatcaattaatgatgtatgtggtct 33118272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 148
Target Start/End: Original strand, 37255713 - 37255748
Alignment:
Q  113 tttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||||||||||||||||| |||||||||||||    
T  37255713 tttttagattcattcaataaatgatgtatgtggtct 37255748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 143
Target Start/End: Complemental strand, 37255795 - 37255760
Alignment:
Q  108 ttcactttttagattcattcaataaattatgtatgt 143  Q
    ||||||||||| ||||||||||||||||||||||||    
T  37255795 ttcactttttaaattcattcaataaattatgtatgt 37255760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 19934747 - 19934713
Alignment:
Q  113 tttttagattcattcaataaattatgtatgtggtc 147  Q
    |||||||||||||||||||||| ||||||||||||    
T  19934747 tttttagattcattcaataaatgatgtatgtggtc 19934713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 29006947 - 29006909
Alignment:
Q  110 cactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  29006947 cactttttaaattcattcaataaatgatgtatgtggtct 29006909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 54164922 - 54164888
Alignment:
Q  113 tttttagattcattcaataaattatgtatgtggtc 147  Q
    |||||||||||||||||||||| ||||||||||||    
T  54164922 tttttagattcattcaataaatgatgtatgtggtc 54164888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 9968297 - 9968365
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    ||||||||||| | |||||| |||| || |||| ||||||||| |||||||||| ||| |||||||||||    
T  9968297 tactccctccgtttttaaatataagtaaatttt-actttttaggttcattcaattaatgatgtatgtggt 9968365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 20814640 - 20814603
Alignment:
Q  111 actttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  20814640 actttttagattcattcaataaatgatgcatgtggtct 20814603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 21587029 - 21586992
Alignment:
Q  111 actttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  21587029 actttttagattcattcaataaatgatgtatgtagtct 21586992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 31089997 - 31089960
Alignment:
Q  111 actttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  31089997 actttttagattcattgaataaatgatgtatgtggtct 31089960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 42013140 - 42013212
Alignment:
Q  75 aatactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||| |||| | |||||| |||| || |||| |||||||| ||||||||||| ||| |||||||||||||    
T  42013140 aatactccgtccgtttttaaatataagtaaatttt-actttttaaattcattcaattaatgatgtatgtggtct 42013212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 43635848 - 43635900
Alignment:
Q  93 aaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    |||| ||||||| |||| |||||||||||||||||||| ||| |||||||||||    
T  43635848 aaatataagaaaatttt-actttttagattcattcaattaatgatgtatgtggt 43635900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 50038446 - 50038514
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    ||||||||||| |  ||||| |||| || |||| |||||||||||||||||||| ||| |||||||||||    
T  50038446 tactccctccgtttctaaatataagcaaatttt-actttttagattcattcaattaatgatgtatgtggt 50038514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 50045668 - 50045736
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    ||||||||||| |  ||||| |||| || |||| |||||||||||||||||||| ||| |||||||||||    
T  50045668 tactccctccgtttctaaatataagcaaatttt-actttttagattcattcaattaatgatgtatgtggt 50045736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 51126099 - 51126171
Alignment:
Q  75 aatactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||| | | |||| |||| || |||| ||||||||| |||||||||| ||| |||||||||||||    
T  51126099 aatactccctccgttttaaaatataagcaaatttt-actttttaggttcattcaattaatgatgtatgtggtct 51126171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 1e-22; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 47507711 - 47507645
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtg 144  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47507711 tactccctccg-tcttaaatgtaagcaatttttcactttttagattcattcaataaattatgtatgtg 47507645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 29070763 - 29070692
Alignment:
Q  76 atactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    |||||||||||||||| ||||||||| |||||||||| |||||| |||||||||||||| ||||||||||||    
T  29070763 atactccctccggtctcaaatgtaagcaatttttcacattttaggttcattcaataaatgatgtatgtggtc 29070692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 41562992 - 41563058
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgt 143  Q
    ||||||||||||||| |||||||||||| |||||| ||||||| |||||||||||||| ||||||||    
T  41562992 tactccctccggtctcaaatgtaagaaacttttcattttttaggttcattcaataaatgatgtatgt 41563058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 47507559 - 47507629
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    |||||| |||| ||| ||||||||| |||||||||||||||||||||||| |||||||||||||| |||||    
T  47507559 tactccatccgatctcaaatgtaagcaatttttcactttttagattcatttaataaattatgtatatggtc 47507629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 14442405 - 14442469
Alignment:
Q  76 atactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgta 140  Q
    |||||||||| ||||| |||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  14442405 atactccctctggtctcaaatgtaagaaacttttcaccttttagattcattcaataaatgatgta 14442469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 29070612 - 29070683
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||| ||||||||| || |||| ||||||||  |||||||||||||| |||||||||||||    
T  29070612 tactccctccggtctcaaatgtaagcaactttttactttttatgttcattcaataaatgatgtatgtggtct 29070683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 52826277 - 52826206
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||| |||||||||||| |||| | ||||| | |||||||||||||| |||||||||||||    
T  52826277 tactccctccggtctcaaatgtaagaaactttttatttttttggttcattcaataaatgatgtatgtggtct 52826206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 11322489 - 11322427
Alignment:
Q  93 aaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtctgaaaaat 155  Q
    ||||||||||||||||| ||||||||| ||||||||||||||  |||||||||| ||||||||    
T  11322489 aaatgtaagaaattttttactttttaggttcattcaataaatattgtatgtggtgtgaaaaat 11322427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 11480510 - 11480448
Alignment:
Q  93 aaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtctgaaaaat 155  Q
    ||||||||||||||||| ||||||||| ||||||||||||||  |||||||||| ||||||||    
T  11480510 aaatgtaagaaattttttactttttaggttcattcaataaatattgtatgtggtgtgaaaaat 11480448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 41563133 - 41563073
Alignment:
Q  86 cggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    |||||| |||||||||||| |||||||||||||| |||| ||||||||| |||||||||||    
T  41563133 cggtctcaaatgtaagaaacttttcactttttaggttcactcaataaatgatgtatgtggt 41563073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 49317105 - 49317045
Alignment:
Q  76 atactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaatta 136  Q
    ||||| |||||| ||| ||||||||||||||||  ||||||||||||||||||||||||||    
T  49317105 atacttcctccgatctcaaatgtaagaaattttgtactttttagattcattcaataaatta 49317045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 49586241 - 49586311
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaa-tttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    ||||||||||||||| ||||||||| || ||||||| ||||||| |||||| |||||||||||||| ||||    
T  49586241 tactccctccggtctcaaatgtaagcaactttttcattttttaggttcatttaataaattatgtatatggt 49586311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 144
Target Start/End: Complemental strand, 34184581 - 34184512
Alignment:
Q  75 aatactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtg 144  Q
    ||||||| || |||||| || ||||||||  |||||||||||||  ||||||||||||||||||||||||    
T  34184581 aatactcacttcggtctcaattgtaagaatcttttcactttttaagttcattcaataaattatgtatgtg 34184512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 10256807 - 10256847
Alignment:
Q  108 ttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  10256807 ttcactttttagattcattcaataaatgatgtatgtggtct 10256847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 34184436 - 34184500
Alignment:
Q  84 tccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||| |||||||| ||| |||||||||||||| || ||||||||||| |||||||| ||||    
T  34184436 tccggtctcaaatgtaaaaaacttttcactttttaggtttattcaataaataatgtatgtagtct 34184500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 49586392 - 49586321
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||| |||| ||| |||| |||| || |||||||||||||| |||||||||||||| |||||| ||||||    
T  49586392 tactccttccgatctcaaatataagtaacttttcactttttaggttcattcaataaatgatgtatatggtct 49586321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 34500215 - 34500165
Alignment:
Q  98 taagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||| |||||||||||||||||||||||| ||||||| ||| |||||||||    
T  34500215 taagcaatttttcactttttagattcattgaataaataatgcatgtggtct 34500165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 52826139 - 52826205
Alignment:
Q  88 gtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtctgaaaaa 154  Q
    |||| |||||||||||| ||||||||||||  ||| ||||||||||| ||||||||| ||| |||||    
T  52826139 gtctcaaatgtaagaaaattttcacttttttaatttattcaataaatgatgtatgtgatcttaaaaa 52826205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 5431451 - 5431414
Alignment:
Q  111 actttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||||||||||||||||||| |||||||||||||    
T  5431451 actttttagattcattcaataaatgatgtatgtggtct 5431414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 19175613 - 19175654
Alignment:
Q  107 tttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  19175613 tttcactttttaggttcattcaataaatgatgtatgtggtct 19175654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 11322399 - 11322435
Alignment:
Q  76 atactccctccggtcttaaatgtaagaaatttttcac 112  Q
    |||||||||||||||| ||||||||||||||||||||    
T  11322399 atactccctccggtctcaaatgtaagaaatttttcac 11322435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 11480420 - 11480456
Alignment:
Q  76 atactccctccggtcttaaatgtaagaaatttttcac 112  Q
    |||||||||||||||| ||||||||||||||||||||    
T  11480420 atactccctccggtctcaaatgtaagaaatttttcac 11480456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 34597546 - 34597586
Alignment:
Q  108 ttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  34597546 ttcactttttagattcattcaacaaatgatgtatgtggtct 34597586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 34597627 - 34597587
Alignment:
Q  108 ttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  34597627 ttcactttttagattcattcaacaaatgatgtatgtggtct 34597587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 52112902 - 52112942
Alignment:
Q  108 ttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  52112902 ttcactttttatattcattcaataaatgatgtatgtggtct 52112942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 52923348 - 52923388
Alignment:
Q  107 tttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    ||||||||||||| |||||||||||||| ||||||||||||    
T  52923348 tttcactttttaggttcattcaataaatgatgtatgtggtc 52923388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 6156663 - 6156702
Alignment:
Q  111 actttttagattcattcaataaattatgtatgtggtctga 150  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  6156663 actttttagattcattcaataaatgatgtatttggtctga 6156702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 146
Target Start/End: Complemental strand, 19175699 - 19175664
Alignment:
Q  111 actttttagattcattcaataaattatgtatgtggt 146  Q
    |||||||||||||||||||||||| |||||||||||    
T  19175699 actttttagattcattcaataaatgatgtatgtggt 19175664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 29797901 - 29797850
Alignment:
Q  93 aaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtg 144  Q
    |||| ||||||||||||||||||||| ||||| | ||||||| |||||||||    
T  29797901 aaatataagaaatttttcactttttaaattcacttaataaatgatgtatgtg 29797850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 37255121 - 37255191
Alignment:
Q  76 atactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    |||||||||||| | || ||| |||| || |||| |||||||||||||||||||| ||| ||||||||||||    
T  37255121 atactccctccgttttttaatataagcaaatttt-actttttagattcattcaattaatgatgtatgtggtc 37255191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 41563031 - 41562992
Alignment:
Q  150 aaaaatgaaaagtttcttacatttgagactggaaggagta 189  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  41563031 aaaaatgaaaagtttcttacatttgagaccggagggagta 41562992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 49316949 - 49317020
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||| |||| |||||||||||| ||| |||||| |||||||||| |||||||| || || ||| ||||||    
T  49316949 tactccatccgctcttaaatgtaataaacttttcagtttttagatttattcaatatataatttatatggtct 49317020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 52880062 - 52879992
Alignment:
Q  74 taatactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtgg 145  Q
    ||||||||||||||||| ||||| |||| ||  ||| ||||||||| |||||||||| ||| ||||||||||    
T  52880062 taatactccctccggtcctaaatataagtaa-atttgactttttaggttcattcaattaatgatgtatgtgg 52879992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 148
Target Start/End: Original strand, 8984220 - 8984254
Alignment:
Q  114 ttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||||||||| |||||||||||||    
T  8984220 ttttagattcattcaataaatgatgtatgtggtct 8984254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 15351823 - 15351789
Alignment:
Q  114 ttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||||||||| |||||||||||||    
T  15351823 ttttagattcattcaataaatgatgtatgtggtct 15351789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 26924365 - 26924291
Alignment:
Q  74 taatactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||||| ||  | |||||||  ||| ||||||| |||||||| ||||||| |||||| ||||||    
T  26924365 taatactccctccggtcctatttataagaaacatttgacttttttgattcattgaataaatgatgtatttggtct 26924291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 148
Target Start/End: Original strand, 38468718 - 38468752
Alignment:
Q  114 ttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||||||||| |||||||||||||    
T  38468718 ttttagattcattcaataaataatgtatgtggtct 38468752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 37096217 - 37096176
Alignment:
Q  103 aatttttcactttttagattcattcaataaattatgtatgtg 144  Q
    ||||||| |||||||||||||||| ||||||| |||||||||    
T  37096217 aatttttgactttttagattcattgaataaatgatgtatgtg 37096176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 39940597 - 39940560
Alignment:
Q  111 actttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  39940597 actttttagattcattcaataaataatgtatgtagtct 39940560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 48; Significance: 8e-18; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 133282 - 133211
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||| ||||||||| ||||||||||||||||| |||||| ||||||  |||||||||||||    
T  133282 tactccctccggtctcaaatgtaagcaatttttcactttttaggttcattgaataaacaatgtatgtggtct 133211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 133131 - 133195
Alignment:
Q  76 atactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgta 140  Q
    |||||||||||||||| |  |||||| || |||| |||||||| ||||||||||||||| |||||    
T  133131 atactccctccggtctcagttgtaagcaactttttactttttatattcattcaataaatgatgta 133195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 8e-18; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 39009830 - 39009901
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||| ||||||||| || ||||||||||| || |||||||||||||| |||||||||||||    
T  39009830 tactccctccggtctcaaatgtaagcaacttttcacttttgaggttcattcaataaatgatgtatgtggtct 39009901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 43493795 - 43493858
Alignment:
Q  85 ccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||||||| ||||||| |||||||||||||| ||||||| |||||||||||||    
T  43493795 ccggtcttaaatgtaagaattttttcaatttttagattcatttaataaatgatgtatgtggtct 43493858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 35504934 - 35504868
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgt 143  Q
    ||||||||||||||| ||||||||||||||||||||||||||  |||||| |||||||||| |||||    
T  35504934 tactccctccggtctcaaatgtaagaaatttttcactttttaagttcattaaataaattatctatgt 35504868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 53739588 - 53739518
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    ||||||||||||||| ||||||||| || |||||||||||||| |||||||||||||| ||| ||||||||    
T  53739588 tactccctccggtctcaaatgtaagcaacttttcactttttaggttcattcaataaatgatgcatgtggtc 53739518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 53739437 - 53739509
Alignment:
Q  76 atactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||||||||||| ||||||||| || |||| ||||||||| |||||||||||||| ||||||| |||||    
T  53739437 atactccctccggtctcaaatgtaagcaactttttactttttaggttcattcaataaatgatgtatgcggtct 53739509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 30675078 - 30675141
Alignment:
Q  76 atactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgt 139  Q
    |||||||||||||||| |||||||||||| |||||||||||||| |||||| ||||||| ||||    
T  30675078 atactccctccggtctcaaatgtaagaaacttttcactttttaggttcatttaataaatgatgt 30675141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 48287990 - 48288049
Alignment:
Q  85 ccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtg 144  Q
    ||||||| ||||||||||||||||| ||||||||| |||||||||||||| |||||||||    
T  48287990 ccggtctcaaatgtaagaaattttttactttttaggttcattcaataaatgatgtatgtg 48288049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 45502856 - 45502783
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtctga 150  Q
    ||||||||||||||| ||||||||  || |||| | ||||||| |||||||||||||| |||||||||||||||    
T  45502856 tactccctccggtctcaaatgtaaacaactttttattttttaggttcattcaataaatgatgtatgtggtctga 45502783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 46890472 - 46890401
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||| ||||||||| |||| |||| || ||||||||||||| ||| ||||||||||| |||||||||||||    
T  46890472 tactcactccggtctcaaatctaagcaacttttcactttttaaatttattcaataaatgatgtatgtggtct 46890401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 14593854 - 14593925
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||| ||| |||||| ||||||||| ||||||||||||||||| | ||||||||||||  || |||||||||    
T  14593854 tacttcctgcggtctcaaatgtaagcaatttttcactttttaggtgcattcaataaatattgcatgtggtct 14593925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 35504805 - 35504863
Alignment:
Q  83 ctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatg 142  Q
    ||||||||| ||||||||| ||||||| |||||||||||||||| ||||||| |||||||    
T  35504805 ctccggtctcaaatgtaagcaattttt-actttttagattcattaaataaatgatgtatg 35504863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 45502712 - 45502783
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||| |||||||||| ||||||||  || |||| | ||||||| |||||||||||||| |||||||||||||    
T  45502712 tacttcctccggtctcaaatgtaaacaactttttattttttaggttcattcaataaatgatgtatgtggtct 45502783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 19227159 - 19227221
Alignment:
Q  86 cggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||| |||| || ||||||||||||||||||| | ||||||| |||||| ||||||    
T  19227159 cggtcttaaatataagcaacttttcactttttagattcacttaataaatgatgtatatggtct 19227221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 39009957 - 39009903
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaata 131  Q
    ||||||||||||||| ||||||||| || |||||||||||||  |||||||||||    
T  39009957 tactccctccggtctcaaatgtaagcaacttttcactttttaagttcattcaata 39009903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 39836976 - 39836939
Alignment:
Q  111 actttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||||||||||||||||||| |||||||||||||    
T  39836976 actttttagattcattcaataaatgatgtatgtggtct 39836939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 2128469 - 2128435
Alignment:
Q  114 ttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||||||||| |||||||||||||    
T  2128469 ttttagattcattcaataaatgatgtatgtggtct 2128435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 24600023 - 24599954
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    ||||||||||| |||||||| |||| || |||| ||||||||| || ||||||| ||| ||||||||||||    
T  24600023 tactccctccgttcttaaatataagcaaatttt-actttttaggtttattcaattaatgatgtatgtggtc 24599954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 26367583 - 26367549
Alignment:
Q  114 ttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||||||||| |||||||||||||    
T  26367583 ttttagattcattcaataaatgatgtatgtggtct 26367549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 27707286 - 27707252
Alignment:
Q  114 ttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||||||||| |||||||||||||    
T  27707286 ttttagattcattcaataaatgatgtatgtggtct 27707252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 36458774 - 36458709
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgt 143  Q
    |||||| |||||||| ||||||||| ||||||| | |||| |||| |||||||||||| ||||||||    
T  36458774 tactccttccggtctcaaatgtaagcaattttttatttttaagat-cattcaataaatgatgtatgt 36458709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 105482 - 105445
Alignment:
Q  111 actttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  105482 actttttaggttcattcaatacattatgtatgtggtct 105445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 12569249 - 12569181
Alignment:
Q  74 taatactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgt 143  Q
    |||||||||||||| | | |||| |||| || |||| |||||||||||||||||||| ||| ||||||||    
T  12569249 taatactccctccgttttaaaatataagcaaatttt-actttttagattcattcaattaataatgtatgt 12569181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 13545713 - 13545645
Alignment:
Q  74 taatactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgt 143  Q
    |||||||||||||| | | |||| |||| || |||| |||||||||||||||||||| ||| ||||||||    
T  13545713 taatactccctccgttttaaaatataagcaaatttt-actttttagattcattcaattaataatgtatgt 13545645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 29241591 - 29241554
Alignment:
Q  111 actttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  29241591 actttttagattcattcaataaatgatgtatttggtct 29241554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 39964324 - 39964361
Alignment:
Q  111 actttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  39964324 actttttagattcattgaataaattatgtatgtagtct 39964361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 43493936 - 43493871
Alignment:
Q  82 cctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    |||||||||| ||||||||  || ||||||||||||| ||||||  ||||||| |||||| |||||    
T  43493936 cctccggtctcaaatgtaaacaacttttcactttttaaattcatctaataaatgatgtatatggtc 43493871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 146
Target Start/End: Original strand, 45819559 - 45819592
Alignment:
Q  113 tttttagattcattcaataaattatgtatgtggt 146  Q
    |||||||||||||||||||||| |||||||||||    
T  45819559 tttttagattcattcaataaatgatgtatgtggt 45819592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 8e-18; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 25312456 - 25312527
Alignment:
Q  76 atactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    |||||||||||||||| ||||||||| ||||||||||||||||  ||||||||||| || ||||||||||||    
T  25312456 atactccctccggtctcaaatgtaagcaatttttcactttttatgttcattcaatatatgatgtatgtggtc 25312527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 23962268 - 23962338
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    ||||||||||||||| ||||||||| || |||||||||||||| |||||||||||||  ||||||||||||    
T  23962268 tactccctccggtctcaaatgtaagcaacttttcactttttaggttcattcaataaacaatgtatgtggtc 23962338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 23962419 - 23962355
Alignment:
Q  76 atactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgta 140  Q
    |||||||||||||||| || |||||| || |||| |||||||||||||||||||||||| |||||    
T  23962419 atactccctccggtctcaattgtaagcaactttttactttttagattcattcaataaatgatgta 23962355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 25312607 - 25312544
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgta 140  Q
    ||||||||||||||| ||||| ||| || |||| ||||||||| |||||||||||||| |||||    
T  25312607 tactccctccggtctcaaatgcaagcaactttttactttttaggttcattcaataaatgatgta 25312544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 27964313 - 27964350
Alignment:
Q  111 actttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  27964313 actttttaggttcattcaataaattatgtatgtggtct 27964350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 44274655 - 44274614
Alignment:
Q  108 ttcactttttagattcattcaataaattatgtatgtggtctg 149  Q
    ||||||||||||||||||||||||||| |||||||| |||||    
T  44274655 ttcactttttagattcattcaataaatgatgtatgtagtctg 44274614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 1204458 - 1204497
Alignment:
Q  87 ggtcttaaatgtaagaaatttttcactttttagattcatt 126  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  1204458 ggtcttaaatgtaagcaatttttcactttttagatacatt 1204497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 143
Target Start/End: Original strand, 41824287 - 41824322
Alignment:
Q  108 ttcactttttagattcattcaataaattatgtatgt 143  Q
    |||| |||||||||||||||||||||||||||||||    
T  41824287 ttcattttttagattcattcaataaattatgtatgt 41824322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 35024354 - 35024404
Alignment:
Q  98 taagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||| |||| ||||||||| || ||||||| |||||||||||||||||    
T  35024354 taagaaaattttgactttttaggttaattcaatcaattatgtatgtggtct 35024404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 43341131 - 43341193
Alignment:
Q  84 tccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    |||| ||| ||| ||||| || |||| |||||||||||||||||||||||| ||| |||||||    
T  43341131 tccgatctcaaacgtaagcaactttttactttttagattcattcaataaatgatgcatgtggt 43341193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 143
Target Start/End: Complemental strand, 17866288 - 17866259
Alignment:
Q  114 ttttagattcattcaataaattatgtatgt 143  Q
    ||||||||||||||||||||||||||||||    
T  17866288 ttttagattcattcaataaattatgtatgt 17866259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 41824371 - 41824334
Alignment:
Q  111 actttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  41824371 actttttaggttcattcaataaatgatgtatgtggtct 41824334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 42579163 - 42579095
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    ||||||||||  | |||||| |||| || |||| |||||||||||||||||||| ||| |||||||||||    
T  42579163 tactccctccatttttaaatataagtaaatttt-actttttagattcattcaattaatgatgtatgtggt 42579095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 47; Significance: 3e-17; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 19931 - 19869
Alignment:
Q  84 tccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    |||||||| ||||||||  |||||||||||||||||||||||| |||||||||||||||||||    
T  19931 tccggtctcaaatgtaaccaatttttcactttttagattcatttaataaattatgtatgtggt 19869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 19817 - 19859
Alignment:
Q  106 ttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||||||||| ||||||| |||||||||||||    
T  19817 ttttcactttttagattcattaaataaatgatgtatgtggtct 19859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 154055 - 153940
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct---gaaaaatgaaaagtttcttacattt 173  Q
    ||||||||||  ||| |||| ||| ||| ||||||||||||||||||||| ||||||| |||||||||||||    |||| | |||| ||||||||||||    
T  154055 tactccctccaatctcaaatataaaaaacttttcactttttagattcatttaataaatgatgtatgtggtctatataaaagtaaaaaatttcttacattt 153956  T
Q  174 gagactggaaggagta 189  Q
    ||||||| || |||||    
T  153955 gagactgaaatgagta 153940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 1e-16; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 5977978 - 5977905
Alignment:
Q  75 aatactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||| |||||| ||||||| |||||| |||||| ||| ||||||||||| |||||||||||||    
T  5977978 aatactccctccggtattaaatataagaaacttttcattttttaaattaattcaataaatgatgtatgtggtct 5977905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 27115382 - 27115309
Alignment:
Q  75 aatactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||||| || | |||| ||  |||||||||||||||||||| |||||||||||||||||||||    
T  27115382 aatactccctccggtctcaattataagcaacctttcactttttagattcattgaataaattatgtatgtggtct 27115309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 5977826 - 5977897
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||| ||| |||||||||| |||||| |||||||||||||||||| ||||||||||  |||||||||||||    
T  5977826 tactctctctggtcttaaatataagaattttttcactttttagattaattcaataaacgatgtatgtggtct 5977897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 33628838 - 33628771
Alignment:
Q  80 tccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    ||||| || ||| ||||||||  |||||||||| ||||||||||||| ||||||||||||||||||||    
T  33628838 tcccttcgatctcaaatgtaaataatttttcacattttagattcatttaataaattatgtatgtggtc 33628771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 31742027 - 31741954
Alignment:
Q  75 aatactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||| |||||||| |||  || ||||||||||||| ||||||  ||||||| |||||||||||||    
T  31742027 aatactccctccgatcttaaatataaacaacttttcactttttaaattcatctaataaatgatgtatgtggtct 31741954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 148
Target Start/End: Original strand, 26385657 - 26385691
Alignment:
Q  114 ttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||||||||||||||||||||||||||||||    
T  26385657 ttttagattcattcaataaattatgtatgtggtct 26385691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 9487164 - 9487096
Alignment:
Q  80 tccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||| | ||||||||||| |||||||||||| |||  || ||||||||||| |||||| ||||||    
T  9487164 tccctccgattttaaatgtaagcaatttttcacttcttaagtttattcaataaatgatgtatatggtct 9487096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 11602881 - 11602841
Alignment:
Q  108 ttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||||||||||||||| |||||||| ||||    
T  11602881 ttcactttttagattcattcaataaatgatgtatgtagtct 11602841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 8270004 - 8269934
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||| | |||||| ||||||||| || |||||||||||| | |||||||||||||| |||||||| ||||    
T  8270004 tactccattcggtctcaaatgtaagcaacttttcacttttttg-ttcattcaataaataatgtatgtagtct 8269934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 13040808 - 13040753
Alignment:
Q  91 ttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    ||||||||||| || |||||||||||||  |||||||| ||||| |||||||||||    
T  13040808 ttaaatgtaagcaacttttcactttttaagttcattcagtaaataatgtatgtggt 13040753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 143
Target Start/End: Original strand, 34840640 - 34840675
Alignment:
Q  108 ttcactttttagattcattcaataaattatgtatgt 143  Q
    ||||||||||||||||||||||||||| ||||||||    
T  34840640 ttcactttttagattcattcaataaatgatgtatgt 34840675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 144
Target Start/End: Complemental strand, 22752668 - 22752638
Alignment:
Q  114 ttttagattcattcaataaattatgtatgtg 144  Q
    |||||||||||||||||||||||||||||||    
T  22752668 ttttagattcattcaataaattatgtatgtg 22752638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 8169207 - 8169170
Alignment:
Q  111 actttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  8169207 actttttagattcattcaataaatgatgtatgtagtct 8169170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 12274920 - 12274883
Alignment:
Q  111 actttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||||||||| || |||||||||||||    
T  12274920 actttttagattcattcaatatataatgtatgtggtct 12274883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 147
Target Start/End: Original strand, 28321596 - 28321629
Alignment:
Q  114 ttttagattcattcaataaattatgtatgtggtc 147  Q
    |||||||||||||||||||||||||||| |||||    
T  28321596 ttttagattcattcaataaattatgtatatggtc 28321629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 28409596 - 28409633
Alignment:
Q  106 ttttcactttttagattcattcaataaattatgtatgt 143  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  28409596 ttttaactttttagattcattcaataaatgatgtatgt 28409633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 38238809 - 38238850
Alignment:
Q  107 tttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||| |||||||| ||| |||||||||||||    
T  38238809 tttcactttttagatacattcaattaatgatgtatgtggtct 38238850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 147
Target Start/End: Complemental strand, 47535078 - 47535045
Alignment:
Q  114 ttttagattcattcaataaattatgtatgtggtc 147  Q
    ||||||||||||||||||||| ||||||||||||    
T  47535078 ttttagattcattcaataaatgatgtatgtggtc 47535045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 131 - 194
Alignment:
Q  83 ctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    ||||| ||| ||||||||  |||||||||||||||||||||||| |||||||||||||||||||    
T  131 ctccgatctcaaatgtaaccaatttttcactttttagattcatttaataaattatgtatgtggt 194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 268 - 204
Alignment:
Q  84 tccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||  ||||||||  || ||||||||||||||||||||||||||||| |||||||||||||    
T  268 tccggtcacaaatgtaaccaacttttcactttttagattcattcaataaatgatgtatgtggtct 204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 885024 - 884953
Alignment:
Q  76 atactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    |||||||||||| ||| |||||||||||| |||||| ||||||  |||||||||||||| ||||||||||||    
T  885024 atactccctccgatctcaaatgtaagaaacttttcattttttaagttcattcaataaatgatgtatgtggtc 884953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 6279403 - 6279476
Alignment:
Q  75 aatactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||| |||||| | ||||||||| ||||||||| ||||||| |||||||| ||||| |||||||||||||    
T  6279403 aatactccatccggtttcaaatgtaagcaatttttcaatttttaggttcattcactaaatgatgtatgtggtct 6279476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 22012589 - 22012657
Alignment:
Q  80 tccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||  ||| |||||||||||| ||||||||||||||||||||||||||||  ||||| |||||||    
T  22012589 tccctccaatctcaaatgtaagaaacttttcactttttagattcattcaataaacgatgtaagtggtct 22012657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 6271917 - 6271984
Alignment:
Q  76 atactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgt 143  Q
    |||||||||||||||| |||||||| ||| |||||| ||| ||| |||||||||||||| ||||||||    
T  6271917 atactccctccggtctcaaatgtaaaaaacttttcattttgtaggttcattcaataaatgatgtatgt 6271984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 6279551 - 6279485
Alignment:
Q  80 tccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    |||||||||||| ||||||||  || |||| |||||||| ||||||||||||||||||||||||||||    
T  6279551 tccctccggtctcaaatgtaaacaactttt-actttttatattcattcaataaattatgtatgtggtc 6279485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 22012715 - 22012668
Alignment:
Q  86 cggtcttaaatgtaagaaatttttcactttttagattcattcaataaa 133  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  22012715 cggtcttaaatgtaagaaacttttcactttttacattcattcaataaa 22012668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 27385612 - 27385542
Alignment:
Q  78 actccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||||| | |||| || ||||||| |||||| |||||| ||||||| |||||||||||||    
T  27385612 actccctccggtcttaattataagcaacttttcaccttttaggttcattgaataaatgatgtatgtggtct 27385542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 19216433 - 19216360
Alignment:
Q  75 aatactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||| ||||| ||||||||| || |||||||||||||| || ||||||||||| ||| |||| ||||    
T  19216433 aatactccctctggtctcaaatgtaagcaacttttcactttttagttttattcaataaatgatgcatgtagtct 19216360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 19216279 - 19216351
Alignment:
Q  75 aatactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    ||||||||| || |||| ||||||||| || |||||| ||||||| |||||||||||||| ||| ||||||||    
T  19216279 aatactccccccagtctcaaatgtaagcaacttttcattttttaggttcattcaataaatgatgcatgtggtc 19216351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 148
Target Start/End: Complemental strand, 24089175 - 24089116
Alignment:
Q  89 tcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||| |||| ||||||||| ||||||| |||||||||||||| ||| |||||||||    
T  24089175 tcttaaatctaagcaatttttcattttttaggttcattcaataaatgatgaatgtggtct 24089116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 10495205 - 10495275
Alignment:
Q  76 atactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    ||||| ||||||||||||  | |||| || |||| | |||||||||||||||||||||| |||||||||||    
T  10495205 atacttcctccggtcttatttataagtaaattttgattttttagattcattcaataaatgatgtatgtggt 10495275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 884873 - 884930
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaat 134  Q
    ||||||||||| ||| |||| ||||||| |||||||||||||| |||| |||||||||    
T  884873 tactccctccgatctcaaatataagaaacttttcactttttaggttcactcaataaat 884930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 1098657 - 1098694
Alignment:
Q  111 actttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||||||||||||||||||| |||||||||||||    
T  1098657 actttttagattcattcaataaatgatgtatgtggtct 1098694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 35099594 - 35099651
Alignment:
Q  84 tccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtat 141  Q
    |||| ||| ||||||||| |||||||| ||||||||||||||| ||||||| ||||||    
T  35099594 tccgatctcaaatgtaagtaatttttctctttttagattcatttaataaatgatgtat 35099651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 12295822 - 12295750
Alignment:
Q  76 atactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||| ||||| | |||||| |||  || |||| |||||||||||||||||||||||| |||||||| ||||    
T  12295822 atactctctccgatgttaaatataaataactttttactttttagattcattcaataaataatgtatgtagtct 12295750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 29807187 - 29807151
Alignment:
Q  111 actttttagattcattcaataaattatgtatgtggtc 147  Q
    |||||||||||||||||||| ||||||||||||||||    
T  29807187 actttttagattcattcaattaattatgtatgtggtc 29807151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 146
Target Start/End: Original strand, 42958632 - 42958664
Alignment:
Q  114 ttttagattcattcaataaattatgtatgtggt 146  Q
    |||||||||||||||||||||||||||||||||    
T  42958632 ttttagattcattcaataaattatgtatgtggt 42958664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 919641 - 919712
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||| ||||||| || || || ||||| ||| ||||||| |||||||||||||||| |||||| ||||||    
T  919641 tactccatccggtcatatatataggaaatatttgacttttttgattcattcaataaatgatgtatttggtct 919712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 14064805 - 14064875
Alignment:
Q  76 atactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    |||||||||||| | |||||| |||| || |||| ||||||||| |||||||||| ||| ||||||||||||    
T  14064805 atactccctccgtttttaaatataagtaaatttt-actttttaggttcattcaattaatgatgtatgtggtc 14064875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 149
Target Start/End: Original strand, 31691291 - 31691326
Alignment:
Q  114 ttttagattcattcaataaattatgtatgtggtctg 149  Q
    ||||||||||||||| ||||||||||||||||||||    
T  31691291 ttttagattcattcattaaattatgtatgtggtctg 31691326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 146
Target Start/End: Original strand, 31947479 - 31947514
Alignment:
Q  111 actttttagattcattcaataaattatgtatgtggt 146  Q
    |||||||||||||||||||| |||||||||||||||    
T  31947479 actttttagattcattcaattaattatgtatgtggt 31947514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 20361973 - 20362038
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgt 143  Q
    ||||||||||| | |||||| |||| || |||| |||||||||||||||||||| ||| ||||||||    
T  20361973 tactccctccgtttttaaatataagcaaatttt-actttttagattcattcaattaatgatgtatgt 20362038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 24089037 - 24089107
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtc 147  Q
    |||||| || ||||| |||| |||  || |||| ||||||||| |||||||||||||| ||||||||||||    
T  24089037 tactccatctggtctcaaatataaacaactttttactttttaggttcattcaataaatgatgtatgtggtc 24089107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 25408651 - 25408617
Alignment:
Q  114 ttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||||||||| |||||||||||||    
T  25408651 ttttagattcattcaataaatgatgtatgtggtct 25408617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 27385492 - 27385534
Alignment:
Q  106 ttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||    
T  27385492 ttttcactttttagactcattgaataaatgatgtatgtggtct 27385534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 30893884 - 30893850
Alignment:
Q  114 ttttagattcattcaataaattatgtatgtggtct 148  Q
    ||||||||||||||||||||| |||||||||||||    
T  30893884 ttttagattcattcaataaatgatgtatgtggtct 30893850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 39126159 - 39126090
Alignment:
Q  76 atactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggt 146  Q
    |||||||||||| ||  |||| |||| || |||| |||||||||||||||||||| ||| |||||||||||    
T  39126159 atactccctccgttccaaaatataagcaaatttt-actttttagattcattcaattaatgatgtatgtggt 39126090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 1023797 - 1023724
Alignment:
Q  75 aatactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||||| |||||| || | |||| || |||||  ||||||| |||||| ||||||| |||||||||||||    
T  1023797 aatactccctacggtctcaattataagtaacttttctttttttaggttcattgaataaatgatgtatgtggtct 1023724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 16052634 - 16052699
Alignment:
Q  75 aatactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgta 140  Q
    |||||| | |||||||| |||| |||| || ||||||||||||| |||||| |||||||| |||||    
T  16052634 aatacttcatccggtctcaaatataagcaacttttcactttttaaattcatccaataaatgatgta 16052699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 29807107 - 29807144
Alignment:
Q  111 actttttagattcattcaataaattatgtatgtggtct 148  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  29807107 actttttagattcattcaattaatgatgtatgtggtct 29807144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 43506209 - 43506172
Alignment:
Q  107 tttcactttttagattcattcaataaattatgtatgtg 144  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  43506209 tttcactttttagattcattcattaaatgatgtatgtg 43506172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 40; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 42585 - 42514
Alignment:
Q  77 tactccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtggtct 148  Q
    |||| ||| |||||| ||||||||| ||||||||||||||||| | ||||||||||||  ||||||||||||    
T  42585 tacttccttcggtctcaaatgtaagcaatttttcactttttaggtgcattcaataaatattgtatgtggtct 42514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 120297 - 120362
Alignment:
Q  79 ctccctccggtcttaaatgtaagaaatttttcactttttagattcattcaataaattatgtatgtg 144  Q
    ||||||| ||| ||||||||| | |||||| || |||||||||||||| | ||||| |||||||||    
T  120297 ctccctctggttttaaatgtatgcaattttccaatttttagattcatttagtaaatgatgtatgtg 120362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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