View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3727-Insertion-10 (Length: 661)
Name: NF3727-Insertion-10
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3727-Insertion-10 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 7 - 360
Target Start/End: Complemental strand, 52226967 - 52226626
Alignment:
| Q |
7 |
agaaagttcagctttgaggtctttgagctgagccaacagatcagttttgtttttctgcctcaactcatgaaccttgactgcaaatcaaaacaaattagtg |
106 |
Q |
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| T |
52226967 |
agaaagttcagctttgagatctttgagctgagccaacagatcagttttgtttttctgcctcaactcatgaaccttgactgcaaatcaaaacaaattagtg |
52226868 |
T |
|
| Q |
107 |
taattgattatgagaaatagttttgatttgagaaattagtg-tttaagaaatttacccattgttgaattcttctgcgactgcgtgtaaaccctaccttgc |
205 |
Q |
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| T |
52226867 |
aaattgattatgagaaatagttttgatttgagaaattagtgttttaagaaatttacccattgttgaattcttctgcgactgcgtgtaaaccctaccttgc |
52226768 |
T |
|
| Q |
206 |
tacaaaatgagaggagatgatggatgataaatatcgaaacttttgggtttgttttcaaatgggccttattattttcttttatgggctttactaacaaaat |
305 |
Q |
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| T |
52226767 |
tacaaaatgagagga---gatggatgataaatatcgaaacttttgggtttgttttcaaatgggcctta----------ttatgggctttactaacaaaat |
52226681 |
T |
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| Q |
306 |
tactactggttgaaactcgttttcctttttaatcaaaccaatttgattagcaaac |
360 |
Q |
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| T |
52226680 |
tactactggttgaaactcgttttccttttgaatcaaaccaatttgattagcaaac |
52226626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 366 - 533
Target Start/End: Complemental strand, 52226591 - 52226412
Alignment:
| Q |
366 |
acactatggtttttattgttctattaaaagaagtacttatatatc------------aaataaatgttaagattaaaaaattcatgaataaaatattctt |
453 |
Q |
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| T |
52226591 |
acactatggtttttattgttctattaaaagaagtacttatatatcctacaatgagaaaaataaatgttaaaattaaaaaattcatgaataaaatattatt |
52226492 |
T |
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| Q |
454 |
tttaaagaaaatagtagtaatattgtgtcaaataaacaaaatatgtaattggttggtaattgtctcaattgatcaatttt |
533 |
Q |
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| T |
52226491 |
tttaaagaaaatagtagtaatattgtgtcaaataaacaaaatatgtaattggttggtaattgtctcaattgatcaatttt |
52226412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 545 - 638
Target Start/End: Complemental strand, 52226363 - 52226270
Alignment:
| Q |
545 |
tgttgaacctaaacatagaaaacaagtttaattagtttatatttgacattcaaatatgtcgaatctttgatttcgtttcttacaaccctgtcaa |
638 |
Q |
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| T |
52226363 |
tgttgaacctaaacatagaaaacaagtttaattagtttatatttgaccttcaaatatgtcgaatctttgattttgtttcttacaaccctatcaa |
52226270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 47805471 - 47805427
Alignment:
| Q |
11 |
agttcagctttgaggtctttgagctgagccaacagatcagttttg |
55 |
Q |
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| T |
47805471 |
agttcagccttgaggtctttgagttgagccaacagatcagatttg |
47805427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 30434220 - 30434292
Alignment:
| Q |
11 |
agttcagctttgaggtctttgagctgagccaacagatcagttttgtttttctgcctcaactcatgaaccttga |
83 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||| | |||||||||||||| ||||| |||| |
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| T |
30434220 |
agttcagctttgaggtctttgagctgagccaatagatcagctttggtcttctgcctcaactcgtgaactttga |
30434292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 19986695 - 19986739
Alignment:
| Q |
11 |
agttcagctttgaggtctttgagctgagccaacagatcagttttg |
55 |
Q |
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| T |
19986695 |
agttcagccttgaggtctttgagctgagccaacagatcagctttg |
19986739 |
T |
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