View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3727-Insertion-11 (Length: 513)
Name: NF3727-Insertion-11
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3727-Insertion-11 |
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| [»] scaffold0041 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 8 - 513
Target Start/End: Original strand, 78416 - 78921
Alignment:
| Q |
8 |
tgaaaatcatagcttctgtggctctgatcaactatatggttcaggttatatgccattttttccactacttttgtttgaacagtggtgtgattctgcaaaa |
107 |
Q |
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| T |
78416 |
tgaaaatcatagcttctgtggctctgatcaactatatggttcaggttatatgccattttttccactacttttgtttgaacagtggtgtgattctgcaaaa |
78515 |
T |
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| Q |
108 |
cttgcttcatttgataatgagggaaagtaatgaaaaggaactttcataagataacatttccaattagcacttgcacctgacattgtttcatccttttcaa |
207 |
Q |
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| T |
78516 |
cttgcttcatttgataatgagggaaagtaaagaaaaggaactttcataagataacatttccaattagcacctgcacctgacattgtttcatccttttcaa |
78615 |
T |
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| Q |
208 |
taacctttctactgctagtactagttgttattttatttatcattttgattcctttgtaatttattttgagtattgaaaattagtgacagagagagtggag |
307 |
Q |
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| T |
78616 |
taacctttctactgctagtactagttgttattttatttatcattttgattcctttgtaatttattttgagtattgaaaattagtgacagagagagtggag |
78715 |
T |
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| Q |
308 |
gcacgcaaagaaaagacagagttttcaatcactctttcttgggatcctcctatgaaaattgattcccaaggaatgacttatataaactataattataacc |
407 |
Q |
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| T |
78716 |
gcacgcaaagaaaagacagagttttcaatcactctttcttgggatcctcctatgaaaattgattcccaaggaatgacttatataaattataattataacc |
78815 |
T |
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| Q |
408 |
ttcccctgacactgccacatccatacctacatttggacacaaattgatactatactaactaaataccaaggatttatttaaatcaaggtcgcattgtggt |
507 |
Q |
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| T |
78816 |
ttcccctgacactgccacatccatacctacatttggacacaaagtgatactatactaactaaataccaaggatttatttaaatcaaggtcgcattgtggt |
78915 |
T |
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| Q |
508 |
ctatga |
513 |
Q |
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| T |
78916 |
ctatga |
78921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 8 - 513
Target Start/End: Complemental strand, 40887868 - 40887363
Alignment:
| Q |
8 |
tgaaaatcatagcttctgtggctctgatcaactatatggttcaggttatatgccattttttccactacttttgtttgaacagtggtgtgattctgcaaaa |
107 |
Q |
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| T |
40887868 |
tgaaaatcatagcttctgtggctctgatcaactatatggttcaggttatatgccattttttccactacttttgtttgaacagtggtgtgattctgcaaaa |
40887769 |
T |
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| Q |
108 |
cttgcttcatttgataatgagggaaagtaatgaaaaggaactttcataagataacatttccaattagcacttgcacctgacattgtttcatccttttcaa |
207 |
Q |
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| T |
40887768 |
cttgcttcatttgataatgagggaaagtaaagaaaaggaactttcataagataacatttccaattagcacctgcacctgacattgtttcatccttttcaa |
40887669 |
T |
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| Q |
208 |
taacctttctactgctagtactagttgttattttatttatcattttgattcctttgtaatttattttgagtattgaaaattagtgacagagagagtggag |
307 |
Q |
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| T |
40887668 |
taacctttctactgctagtactagttgttattttatttatcattttgattcctttgtaatttattttgagtattgaaaattagtgacagagagagtggag |
40887569 |
T |
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| Q |
308 |
gcacgcaaagaaaagacagagttttcaatcactctttcttgggatcctcctatgaaaattgattcccaaggaatgacttatataaactataattataacc |
407 |
Q |
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| T |
40887568 |
gcacgcaaagaaaagacagagttttcaatcactctttcttgggatcctcctatgaaaattgattcccaaggaatgacttatataaattataattataacc |
40887469 |
T |
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| Q |
408 |
ttcccctgacactgccacatccatacctacatttggacacaaattgatactatactaactaaataccaaggatttatttaaatcaaggtcgcattgtggt |
507 |
Q |
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| T |
40887468 |
ttcccctgacactgccacatccatacctacatttggacacaaagtgatactatactaactaaataccaaggatttatttaaatcaaggtcgcattgtggt |
40887369 |
T |
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| Q |
508 |
ctatga |
513 |
Q |
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|||||| |
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| T |
40887368 |
ctatga |
40887363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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