View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3727-Insertion-13 (Length: 545)
Name: NF3727-Insertion-13
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3727-Insertion-13 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 7 - 545
Target Start/End: Complemental strand, 26915127 - 26914586
Alignment:
| Q |
7 |
aattacaacctagcttttgccgtttctttgaatagttatattctgttttatgttccattgtagttttcttagaaaagtgttgtgtatcatatcccaaaaa |
106 |
Q |
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| T |
26915127 |
aattacaacctagcttttgccgtttcttcgaatagttatattctgttttatgttccattgtagttttcttagaaaagtgttgtgtaacatatcccaaaaa |
26915028 |
T |
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| Q |
107 |
agtttgaaagattat---ctcgttttcttgatgtacctgactctgaatgtatatgaaatttaggctctccttgcaataatgggtagtcctctttgcttgt |
203 |
Q |
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| T |
26915027 |
agtttgaaagattattatctcgttttcttgatgtacctgactctgaatgtatatggaatttaggctctccttgcaataatggatagtcctctttgcttgt |
26914928 |
T |
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| Q |
204 |
ctggtagagtaagcgctgtattcatccgaaccgatgaaggaattcttattaaagttgatccacaaggcaggataccaaaaacttttggaaagttttgtaa |
303 |
Q |
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| T |
26914927 |
ctggtagagtaagcgctgtattcatccgaaccgatgaaggaattcttattaaagttgatccacaaggcaggataccagaaacttttggaaagttttgtaa |
26914828 |
T |
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| Q |
304 |
tatgatgtgtaagtttctctattcatgaaatgtattatcccataatccattctcattcttggctttgatcatcatattgacatctttgcttttctcccac |
403 |
Q |
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| T |
26914827 |
tatgatgtgtaagtttctctattcatgaaatgtattatcccataatccattctcattcttggctttgatcatcatattgacatctttgcttttctcccac |
26914728 |
T |
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| Q |
404 |
ttcaaaatacctaataattattttagcggagttgctgcaaaaatccagtatcaaatcaaagggcaatgagggaaggcttttagagttaattcaaaatcct |
503 |
Q |
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| T |
26914727 |
ttcaaaatacctaataattattttagcggagttgctgcaaaaatccagtatcaaatcaaagggcaatgagggaaggctttttgagttaattcaaaatcct |
26914628 |
T |
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| Q |
504 |
gtgactcaacacttaccggtcaactcgcttaaaataggtgag |
545 |
Q |
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| T |
26914627 |
gtgactcaacacttaccggtcaactcgcttaaaataggtgag |
26914586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 35 - 545
Target Start/End: Complemental strand, 51182834 - 51182331
Alignment:
| Q |
35 |
tgaatagttatattctgttttatgttccattgtagttttcttagaaaagtgttgtgtatcatatcccaaaaaagtttgaaagattat---ctcgttttct |
131 |
Q |
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| T |
51182834 |
tgaatagttatattttgttttatgttccattgtagttttcttagaaaagtattat-tataaaa-ccctgaaaagtttgaaagattattatctcattttct |
51182737 |
T |
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| Q |
132 |
tgatgtacctgactctgaatgtatatgaaatttaggctctccttgcaataatgggtagtcctctttgcttgtctggtagagtaagcgctgtattcatccg |
231 |
Q |
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| T |
51182736 |
tgatgtacctaactctgaatgtatatggattttaggctctccttgcaatattgagtagtgcactttgcttggctggtagagtaagcgctatattcatcag |
51182637 |
T |
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| Q |
232 |
aaccgatgaaggaattcttattaaagttgatccacaaggcaggataccaaaaacttttggaaagttttgtaatatgatgtgtaag-----tttctct--- |
323 |
Q |
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| T |
51182636 |
aaccggtgaaggaattcttattaaagttgatccacaaaccaggataccaaaaacttttggaaatttttgtaatatgatgggtaagctaagtttctcatca |
51182537 |
T |
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| Q |
324 |
attcatgaaatgtattatcccataatccattctcattcttggctttgatcatcatattgacatctttgcttttctcccacttcaaaatacctaataatta |
423 |
Q |
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| T |
51182536 |
actcatgaaatgtattatc---------------attcttggctttgatcatcatattgacatctttgcttttc-cccacttcaaaatacttaataatta |
51182453 |
T |
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| Q |
424 |
ttttagcggagttgctgcaaaaatccagtatcaaatcaaagggcaatgagggaaggcttttagagttaattcaaaatcctgtgactcaacacttaccggt |
523 |
Q |
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| T |
51182452 |
ttttagtggagttgctgcaaaaatccagtatcaaatcaaaggacaatgagggaaagcttttaaagttaattcaaaatcctgtgactcaacacttacccgc |
51182353 |
T |
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| Q |
524 |
caactcgcttaaaataggtgag |
545 |
Q |
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| T |
51182352 |
caactcgcttaaaattggtgag |
51182331 |
T |
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Back To:
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