View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3727-Insertion-14 (Length: 310)
Name: NF3727-Insertion-14
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3727-Insertion-14 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 310
Target Start/End: Original strand, 41080634 - 41080935
Alignment:
| Q |
8 |
gcagcgtcagaatgcagcttctgtttttgatgcagtagcagaagagaataatgagcaccgatcctccattctgaatctggaactgaaggggaccggtctt |
107 |
Q |
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| T |
41080634 |
gcagcgtcagaatgcagcttctgtttttgatgcagtagcagaagagaataatgagcaccgatcctccattctgaatctggaactgaaggggaccggtctt |
41080733 |
T |
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| Q |
108 |
agatttgtattgtacatgcttaaannnnnnncaagaagcagcatttttatgaggcttgtaattcatagaagtttgcatttcattctttagtcgattgatt |
207 |
Q |
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| T |
41080734 |
agatttgtattgtacatgcttaaatttttt-caagaagcagcatttttatgaggcttgtaattcatagaagtttgcatttcattctttagtcaattgatt |
41080832 |
T |
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| Q |
208 |
gtgagcaaggagatggttattcagaggatatcatggtggcaaggagatttgtggagtctcttatgccaatatacagtattatgctagttgtgtgtaatct |
307 |
Q |
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| T |
41080833 |
gtgagcaaggagatggttattcagaggatatcatggtggcaatgagatttgtggagtctcttatgccaatatacagtattatgctagttgtgtgtaatct |
41080932 |
T |
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| Q |
308 |
gca |
310 |
Q |
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| T |
41080933 |
gca |
41080935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 41103038 - 41103310
Alignment:
| Q |
13 |
gtcagaatgcagcttctgtttttgatgcagtagcagaagagaataatgagcaccgatcctccattctgaatctggaactgaaggggaccggtcttagatt |
112 |
Q |
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| T |
41103038 |
gtcagaatgcagcttctgtttttgacacagtggcagaagggaataataagcaccgagcttccatgttcaatccggagctgatggggtttggtcttaaaat |
41103137 |
T |
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| Q |
113 |
tgtattgtacatgc----ttaaannnnnnncaagaagcagcatttttatgaggcttgtaattcatagaagtttgcatttcattctttagtcgattgattg |
208 |
Q |
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| T |
41103138 |
tggattgtgcgtgcaggcttaaatttttt-caagaagtggcatttttgtgagacttgtaattcgtagcagtttgcatttcattctttagtcaagtgattg |
41103236 |
T |
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| Q |
209 |
tgagcaaggagat-------------ggttattcagaggatatcatggtggcaaggagatttgtggagtctctt |
269 |
Q |
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| T |
41103237 |
tgagcagggagatggttccaatgaagggttattcagtggatatcatggtgacaagtagatttgtggagtctctt |
41103310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 1216410 - 1216457
Alignment:
| Q |
13 |
gtcagaatgcagcttctgtttttgatgcagtagcagaagagaataatg |
60 |
Q |
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| T |
1216410 |
gtcagaatggagcttctatttttgacgcagtagcagaagagaataatg |
1216457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 269
Target Start/End: Original strand, 1216630 - 1216677
Alignment:
| Q |
222 |
ggttattcagaggatatcatggtggcaaggagatttgtggagtctctt |
269 |
Q |
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| T |
1216630 |
ggttattcaacggatataatggtggcaaggagatttgtggagtctctt |
1216677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 41088836 - 41088882
Alignment:
| Q |
223 |
gttattcagaggatatcatggtggcaaggagatttgtggagtctctt |
269 |
Q |
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| T |
41088836 |
gttattcagaggatatcatggtggtaaggagatttatggggtctctt |
41088882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 1216545 - 1216619
Alignment:
| Q |
151 |
tttttatgaggcttgtaattcatagaagtttgcatttcattctttagtcgattgattgtgagcaaggagatggtt |
225 |
Q |
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| T |
1216545 |
tttttgtgaggattgtaattcgtagcaatttgcatttaattctttactcaagtgattgtgagcagggagaaggtt |
1216619 |
T |
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