View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3727-Insertion-16 (Length: 364)
Name: NF3727-Insertion-16
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3727-Insertion-16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 7 - 364
Target Start/End: Complemental strand, 21509718 - 21509361
Alignment:
| Q |
7 |
atggatgacgcgggtctcgcatgggcgagggaggcttcaccgctccatttttcctagtaattctttcatgaaatttaacatcttcctgaaaactattttc |
106 |
Q |
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| T |
21509718 |
atggatgacgcgggtctcgcatgggcgagggaggcttcactgctccatttttcctagtaattctttcatgaaatttaacatcttcctgaaaactattttc |
21509619 |
T |
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| Q |
107 |
tttctgttcaacagaatttttagaaaatcctgttttttcattaagactgaagtcattgagattataatcacccttgatagctttacttatgaaatgcaat |
206 |
Q |
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| T |
21509618 |
tttctgttcaacagaatttttagaaaatcctgttttttcattaagactgaagtcattgagattataatcacccttgattgctttacttatgaaatgcaat |
21509519 |
T |
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| Q |
207 |
gcctttgtttcaaatgccatcctttcatgaacattactactgcttctttgaatagaactaggatttgtaattgttgaagttgataaatgattgttagaat |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21509518 |
gcctttgtttcaaatgccatcctttcatgaacattactactgcttctttgaatagaactaggatttgtaattgttgaagttgataaacgattgttagaat |
21509419 |
T |
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| Q |
307 |
tgctcataaaattcccttggttctgtatttttgacttagattcgttggtgatttcttg |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21509418 |
tgctcataaaattcccttggttctgtatttttgacttagattcgttggtgatttcttg |
21509361 |
T |
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