View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3727-Insertion-17 (Length: 212)
Name: NF3727-Insertion-17
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3727-Insertion-17 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 47292350 - 47292554
Alignment:
| Q |
8 |
cttacagttgtaaataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaact |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292350 |
cttacagttgtaaataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaact |
47292449 |
T |
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| Q |
108 |
ccactgcataagcaaatggatttccacaaagcttccctgcagtggtgacggccgctgggtaagcaaaacagttaccgtaatatccaacaagtggcgaatt |
207 |
Q |
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| T |
47292450 |
ccactgcataaccaaatggatttccacaaagcttccctgcagtggtgacggccgctgggtaagcaaaacagttaccgtaatatccaacaagtggcgaatt |
47292549 |
T |
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| Q |
208 |
gttaa |
212 |
Q |
| |
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||||| |
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| T |
47292550 |
gttaa |
47292554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 47298957 - 47299161
Alignment:
| Q |
8 |
cttacagttgtaaataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaact |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47298957 |
cttacagttgtaaataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaact |
47299056 |
T |
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| Q |
108 |
ccactgcataagcaaatggatttccacaaagcttccctgcagtggtgacggccgctgggtaagcaaaacagttaccgtaatatccaacaagtggcgaatt |
207 |
Q |
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| T |
47299057 |
ccactgcataaccaaatgggtttccacaaagcttccttgcagtggtgacggccgctgggtaagcaaaacagttaccgtagtatccaacaagtggcgaatt |
47299156 |
T |
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| Q |
208 |
gttaa |
212 |
Q |
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||||| |
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| T |
47299157 |
gttaa |
47299161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 8 - 211
Target Start/End: Complemental strand, 47267898 - 47267695
Alignment:
| Q |
8 |
cttacagttgtaaataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaact |
107 |
Q |
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|||| |||||||||||||||||| || ||||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
47267898 |
cttatagttgtaaataaacaccgctctttaataaccataagatctgctacagaatgcatatattcctctgtaacttcagcttttaattttcttaccaact |
47267799 |
T |
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| Q |
108 |
ccactgcataagcaaatggatttccacaaagcttccctgcagtggtgacggccgctgggtaagcaaaacagttaccgtaatatccaacaagtggcgaatt |
207 |
Q |
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|||| |||||| | |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
47267798 |
ccacagcataacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaattaccgtagtatccaacaagtggcgaatt |
47267699 |
T |
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| Q |
208 |
gtta |
211 |
Q |
| |
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|||| |
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| T |
47267698 |
gtta |
47267695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 47283863 - 47283665
Alignment:
| Q |
8 |
cttacagttgtaaataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaact |
107 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||| || ||||||| ||||||| |||||||| ||| | |
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| T |
47283863 |
cttactgttgtaaataaacatcgttccttaataaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaatt |
47283764 |
T |
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| Q |
108 |
ccactgcataagcaaatggatttccacaaagcttccctgcagtggtgacggccgctgggtaagcaaaacagttaccgtaatatccaacaagtggcgaat |
206 |
Q |
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| T |
47283763 |
ccactgcataacctaaagggtttccacaaagcttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaat |
47283665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 47279264 - 47279072
Alignment:
| Q |
14 |
gttgtaaataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactg |
113 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||| || ||||||| ||||||| |||||||| ||| |||||| |
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| T |
47279264 |
gttgtaaataaacatcgttccttaataaccataagatctgccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactc |
47279165 |
T |
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| Q |
114 |
cataagcaaatggatttccacaaagcttccctgcagtggtgacggccgctgggtaagcaaaacagttaccgtaatatccaacaagtggcgaat |
206 |
Q |
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| T |
47279164 |
cataacctaaaggatttccacaaagcttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaat |
47279072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 47242990 - 47242805
Alignment:
| Q |
12 |
cagttgtaaataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccac |
111 |
Q |
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| T |
47242990 |
cagttgtaaataaacatcgttccttaataaccataaaatctgctaaagaatgcatgtattcctctgtaacttgagtttttgcttttcttatcaactccac |
47242891 |
T |
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| Q |
112 |
tgcataagcaaatggatttccacaaagcttccctgcagtggtgacggccgctgggtaagcaaaacagttaccgtaatatccaacaa |
197 |
Q |
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||||||| | ||| | ||||||||||||| | ||| |||||||| ||||| | | |||||| || ||||||||||||||||||| |
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| T |
47242890 |
tgcataacctaattggtttccacaaagctcctttgcggtggtgacagccgccgagaaagcaatgcaattaccgtaatatccaacaa |
47242805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 47257114 - 47256935
Alignment:
| Q |
15 |
ttgtaaataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgc |
114 |
Q |
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| T |
47257114 |
ttgtaaataaacatcgttccttaataaccataaaatctgccaatgagtgcatgtacttctctgtaacttgagcttttgcttttcttatcaactccactgc |
47257015 |
T |
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| Q |
115 |
ataagcaaatggatttccacaaagcttccctgcagtggtgacggccgctgggtaagcaaaacagttaccgtaatatccaa |
194 |
Q |
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|||| | ||| | ||||||||||||| | ||| |||||||| ||||| | | |||||| |||||| || |||||||||| |
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| T |
47257014 |
ataacctaattggtttccacaaagctcctttgcggtggtgactgccgccgagaaagcaatacagttgccataatatccaa |
47256935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 32731655 - 32731475
Alignment:
| Q |
14 |
gttgtaaataaacaccgttccttaataaccataagatcggccacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactg |
113 |
Q |
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|||||||||||||| |||||||||||||||||| ||| || | |||||||||||||||||| ||||||| || |||| |||||||| ||||||||||| |
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| T |
32731655 |
gttgtaaataaacatcgttccttaataaccatacaatctgctaaagaatgcatgtattcctctgtaacttgagtttttgcttttcttatcaactccactg |
32731556 |
T |
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| Q |
114 |
cataagcaaatggatttccacaaagcttccctgcagtggtgacggccgctgggtaagcaaaacagttaccgtaatatccaa |
194 |
Q |
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| T |
32731555 |
cataacctaattggtttccacaaagctcctttgcggtggtgacagccgccgagaaagcaatacaattaccgtaatatccaa |
32731475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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