View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3727-Insertion-18 (Length: 267)
Name: NF3727-Insertion-18
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3727-Insertion-18 |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 45334369 - 45334629
Alignment:
| Q |
7 |
atcttttgttggtagattggagaattaaaaacatgacaattgctttccaattttctgtttttactgaaaatagagtgtcgaaggctttatagttaaaata |
106 |
Q |
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| T |
45334369 |
atcttttgttggtagattggagaattaaaaacatgacaattgctttccaattttctgtttttactgaaaatagagtgtcgaaggctttatagttaaaata |
45334468 |
T |
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| Q |
107 |
acatattgtagttttgaaaaagaagacaccaacacaaaatcgtttttaattatataaacaattttgcatccaataaaagaaagccatactcaatgaaatt |
206 |
Q |
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| T |
45334469 |
acatattgtagttttgaaaaagaagacaccaacacaaaatcgtttttaattatataaacaattttgcatccaataaaagaaagccatactcaatgaaatt |
45334568 |
T |
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| Q |
207 |
gtcatattcaatagccttgcttttgccaccagtcttgtcaaacttggagacgagcaagtcc |
267 |
Q |
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| T |
45334569 |
gtcatattcaatagccttgcttttgccaccagtcttgtcaaacttggagacgagcaagtcc |
45334629 |
T |
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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 267
Target Start/End: Original strand, 20789421 - 20789502
Alignment:
| Q |
186 |
aaagccatactcaatgaaattgtcatattcaatagccttgcttttgccaccagtcttgtcaaacttggagacgagcaagtcc |
267 |
Q |
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| T |
20789421 |
aaagcaatactcgatgaaattgtcatattcgacggctttgtttttgccaccagttttgtcaaacttggagacgagcaagtcc |
20789502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 18972087 - 18972147
Alignment:
| Q |
8 |
tcttttgttggtagattggagaattaaaaacatgacaattgctttccaattttctgttttt |
68 |
Q |
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| T |
18972087 |
tcttttgttggtaaattggaggattagaaacatgactattgcttttcaattagctgttttt |
18972147 |
T |
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