View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3727-Insertion-2 (Length: 1092)
Name: NF3727-Insertion-2
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3727-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 664; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 211 - 990
Target Start/End: Complemental strand, 3699539 - 3698748
Alignment:
| Q |
211 |
gtgaaattcattaaaagggggattgaatggcgagaatttccatcagattctctccgataaaatttccacgggagagtatctcaattctatgaggtgcttg |
310 |
Q |
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| T |
3699539 |
gtgaaattcattaagagggggattgaatggcgagaatttccatcagattctctccgataaaatttccacgggagagaatctcaattctatgaggtgcctg |
3699440 |
T |
|
| Q |
311 |
caagtactccgacgccaaatttatcatactagattttctgacttatcatgtcacgagtaggtgaatggatt-ggtccttgcaaccaaattcccataacag |
409 |
Q |
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| T |
3699439 |
caagtactccgacgccaaatttgtcatactagattttctgacttatcatgtcacgagtaggtggatggatttggtcattgcaaccaaattcccataacag |
3699340 |
T |
|
| Q |
410 |
gtagaaatcttaaaatttaaatttaaagagaactctggtcctgaatgtacaattttatagacaataaagtggcttataactgaaaataactaatttcatt |
509 |
Q |
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| T |
3699339 |
gtagaaatcttaaaatttaaatttaaagagaactctggtcctgaatgtacaattttatagacaataaagtggcttataactgaaaataactaatttcatt |
3699240 |
T |
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| Q |
510 |
ctaattgaaagtttgttgaatgcaagatgatagcgacactatatgctttatgctctgttgtggta----cataattgtcttcttatacaaacaaacaaac |
605 |
Q |
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| T |
3699239 |
ctaattgaaagtttgttgaatgcaagatgatagcgacactatatgctttatgctctgttgtggtacatacataattgtcttcttatacaaacaaacaaac |
3699140 |
T |
|
| Q |
606 |
gaacnnnnnnntcattttaggacataagaagtgacaacttagaaagaaatcagtcgttaatctcaaactgtatatggactgtttttgcatgtgctaggca |
705 |
Q |
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| T |
3699139 |
gaacaaaaaaatcattttaggacataagaagtgacaacttagaaagaaatcagtcgttaatctcaaactgtatatggactgtttttgcatgtgctaggca |
3699040 |
T |
|
| Q |
706 |
tttcatatgctc---attattagctttcgataaatgaagagaaaccatactaaagaaaatcacattccaacccactactttgctagctggatatggaatg |
802 |
Q |
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| T |
3699039 |
tttcatatgctcattattattagctttcaataaatgaagagaaaccatactaaagaaaatcacatttcaacccactactttgctagctggatatggaatg |
3698940 |
T |
|
| Q |
803 |
gatta-ccttaaaataacagttggactttctcacatcacatggctgtgtttattaatgacatcttactttctattaatgattaacaagccgactttccaa |
901 |
Q |
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| T |
3698939 |
gattacccttaaaataacagttggacttactcacatcacatggctgtgtttattaatgacatcttactttctattaatgattaacaagccgactttccaa |
3698840 |
T |
|
| Q |
902 |
aaggcactgcaaccaaacagcttatatctaacaaacacatcac-acattaggagggtgaggaattac-agtaacacc-acttttatatttca |
990 |
Q |
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| T |
3698839 |
aaggcactgcaaccaaacagcttatatctaacaaacacatcacaacattaggagggtgaggaattacaagtaacaccaacttttatatttca |
3698748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 3699774 - 3699571
Alignment:
| Q |
14 |
aataatattaagattttgttactccttagtttaggtaaatgcgttccactacaatacaatgtatactatgaccttatacttcatatgttccatgattcat |
113 |
Q |
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| T |
3699774 |
aataatattaagattttgttactccttagtttaggtaaatgcgttacactacaatacaatgtatactatgaccttatacttcatatgttccatgattcat |
3699675 |
T |
|
| Q |
114 |
cattgtttgtttaggttaagctatagtgtttgtttaattaaactctaaataaggatgaaacttgggaatggaaacacccttctttgaaactttcgtagtg |
213 |
Q |
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| T |
3699674 |
cattgtttgtttagtttaagctatagtgtttgtttaattaaactctaaataaggatgaaacttgggaatggaaacacccttctttgaaactttcgtagtg |
3699575 |
T |
|
| Q |
214 |
aaat |
217 |
Q |
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|||| |
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| T |
3699574 |
aaat |
3699571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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