View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3727-Insertion-5 (Length: 867)

Name: NF3727-Insertion-5
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3727-Insertion-5
NF3727-Insertion-5
[»] chr3 (1 HSPs)
chr3 (7-867)||(359282-360150)


Alignment Details
Target: chr3 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 7 - 867
Target Start/End: Original strand, 359282 - 360150
Alignment:
Q  7 acctttctttccatataataactactataaca----accttaatccccatagttagcataacatttgccaagccaacatagaatctagaattaattaata 102  Q
    ||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  359282 acctttctttccatataataactactataacacctaaccttaatccccatagttagcataacatttgccaagccaacatagaatctagaattaattaata 359381  T
Q  103 atttacaaatctcatcaataactaggcagctaaaatttctgccgaacatactagaaaccctnnnnnnnnn-cactagtaagttctattaaatgatgttct 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||    
T  359382 atttacaaatctcatcaataactaggcagctaaaatttctgccgaacatactagaaaccctaaaaaaaaaacactagtaagttctattaaatgatgttct 359481  T
Q  202 agtcattnnnnnnnnnnnn--gaatacttagaacatcatttaattccacatcaaaaagaacatcatttaattaaccttctaatcatcatcat-------- 291  Q
    |||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  359482 agtcattaaaaaaaaaaaaaagaatacttagaacatcatttaattccacatcaaaaagaacatcatttaattaaccttctaatcatcatcatcatcatca 359581  T
Q  292 -gagtaaaacttgtaagtttttatcgaaacaacaattgttcgtattcctccaataggtgcaagaactgctattatagctccaagaatgatacaaaactgt 390  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  359582 tgagtaaaacttgtaagtttttatcgaaacaacaattgttcgtattcctccaataggtgcaagaactgctattataactccaagaatgatacaaaactgt 359681  T
Q  391 aacnnnnnnnn-taaataacttagataaacagattattttctatgaacattaattaaccatatttgaataagctcnnnnnnnnnnnnnnn---tgtaccg 486  Q
    |||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||     
T  359682 aacaaaaaaaaataaataacttagataaacagattattttctatgaacattaattaaccatatttgaataagctcaaaaaaaaaataaaaaaatgtacca 359781  T
Q  487 ctgatgcaatccaatgaaagctgcatannnnnnnnnnnnnggccttaagccataaggcacaaggaatctgtatcacgtatttcaaatttagtaagaagat 586  Q
    |||||||||||||||||||||||||||             |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  359782 ctgatgcaatccaatgaaagctgcatatttttggttttttggccttaagccataaggcacaaggtatctgtatcacgtatttcaaatttagtaagaagat 359881  T
Q  587 attaatacatgaagatatttaaagggatgcttaataacaaatattaattcttacaatatatgatgttgctgcaaatgctagtcctccaaaaaaccctaac 686  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  359882 attaatacatgaagatatttaaagggatgcttaataacaaatattaattcttacaatatatgatgttgctgcaaatgctagtcctccaaaaaaccctaac 359981  T
Q  687 aagcctccaaaaaatgggaagcttacagcaaccaatccaactagaactgtaaagaaatgaaaatttcatattaaattaaatatacatgcatacatatctc 786  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||| |||    
T  359982 aagcctccaaaaaatgggaagcttacagcaaccaatccaactagaactgtaaagaaatgaaaatttcatattaaattaaat------------ataactc 360069  T
Q  787 aatttattgtcaataatatatgcttcgagcaacgacacgaaaatgtcatatatttaacacaatattgatcttaccgacata 867  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  360070 aatttattgtcaataatatatgcttcgagcaacgacacgaaaatgtcatatatttaacacaatattgatcttaccgacata 360150  T

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