View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3727-Insertion-6 (Length: 823)
Name: NF3727-Insertion-6
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3727-Insertion-6 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 734; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 734; E-Value: 0
Query Start/End: Original strand, 7 - 823
Target Start/End: Original strand, 33521085 - 33521902
Alignment:
| Q |
7 |
acctttggcagttggaaacaaacttgcatcacacacaaatagtccttcagcttcccaattctgtccattttcatcaaccgtgccttccttatcagtgatt |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33521085 |
acctatggcagttggaaacaaacttgcatcacacacaaatagtccttcagcttcccaattctgtccattttcatcaaccgtgccttccttatcagtgatt |
33521184 |
T |
|
| Q |
107 |
cctatcctacaactccccatctggtgagcagatgcatacatattccaagcttcttgatgtgacattggtccttctgctgcgtaaaccgattccacgaact |
206 |
Q |
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| T |
33521185 |
cctatcctacaactccccatctggtgagcagatgcatacatattccaagtttcttgatgtgacattggtccttctgctgcgtaaaccgattccacgaact |
33521284 |
T |
|
| Q |
207 |
tattcaattccatttcattagttccactacaaacaattctctgtccatcacttctgtgagtacctacctcaactgctccagctgctataagtatcctcag |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33521285 |
tattcaattccatttcattagttccactacaaacaattctctgtccatcacttctgtgagtacctacctcaactgctccagctgctataagtatcctcag |
33521384 |
T |
|
| Q |
307 |
cgcccgctgaagtccgtgcttcatgttctctttgtcgaattcttcatctaacccatagtttatcctaccctcgctcttcacctctccacagcctttgtcc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33521385 |
cgcccgctgaagtccgtgcttcatgttctctttgtcgaattcttcatctaactcatagtttatcctaccctcgctcttcacctctccacagcctttgtcc |
33521484 |
T |
|
| Q |
407 |
tgaataattgtgatgaaatgatcagtcctcgaatatcttagcattctttcattgaagtcaaatccggattcccaaggaatcacggtagaaaatgctcctg |
506 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||| |||| |
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| T |
33521485 |
tgaataattgtgatgaaatgaacagtcctcgaatatcttagcattctttctttgaagtcgaatccggattcccaaggaatcatggtagaaaatgcgcctg |
33521584 |
T |
|
| Q |
507 |
gtcctagtgaaggagtttcaattatagattttacttttgagtcttcatctgatagcactttgtgtacagaagttattattcctccctcatagctttta-c |
605 |
Q |
| |
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|||||||||| |||||||||||||||| | ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33521585 |
gtcctagtgatggagtttcaattatagctcttactttagagtcatcatctgatagcactttgtgtacagaagttattattcctccctcatagcttttacc |
33521684 |
T |
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| Q |
606 |
cttgagatcagacattgtgtctggaaaatgtccccacgtcattagcacgggatgaagatgaaagtgtcagccgatattcttattctttaatccactagag |
705 |
Q |
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| T |
33521685 |
cttgagatcagacattgtgtctggaaaatgtccccacgtcattagcaccggatgaagatgaaggtgtcggccgatattcttattctttaatccactagag |
33521784 |
T |
|
| Q |
706 |
atcattaaaggtggcgtggaaagtgctccacatgatgagattgttgctttggcctcaacatgaattttccatgtgatgttttctgttaaagcatttgcca |
805 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||| |
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| T |
33521785 |
atcattaaaggtggcgtggaaagtgctccacatgatgagattgttgctttggcctcaacttgaattttctatgtgatgttttctgttaaaacatttgcca |
33521884 |
T |
|
| Q |
806 |
taactcctaaacatttct |
823 |
Q |
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|||||||||||||||||| |
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| T |
33521885 |
taactcctaaacatttct |
33521902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 31321874 - 31321734
Alignment:
| Q |
14 |
gcagttggaaacaaacttgcatcacacacaaatagtccttcagcttcccaattctgtccattttcatcaaccgtgccttccttatcagtgattcctatcc |
113 |
Q |
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|||||||||| | ||| |||||||| ||||| | ||||||||||||||| ||| |||||||||||||| | |||||||| ||| | | ||| || | |
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| T |
31321874 |
gcagttggaagaacactagcatcacaaacaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattc |
31321775 |
T |
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| Q |
114 |
tacaactccccatctggtgagcagatgcatacatattccaa |
154 |
Q |
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| T |
31321774 |
tacaactccccatttgatgagcagaagtatacaaattccaa |
31321734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 31334127 - 31333987
Alignment:
| Q |
14 |
gcagttggaaacaaacttgcatcacacacaaatagtccttcagcttcccaattctgtccattttcatcaaccgtgccttccttatcagtgattcctatcc |
113 |
Q |
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| T |
31334127 |
gcagttggaagaacactagcatcacaaacaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattc |
31334028 |
T |
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| Q |
114 |
tacaactccccatctggtgagcagatgcatacatattccaa |
154 |
Q |
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| T |
31334027 |
tacaactccccatttgatgagcagaagtatacaaattccaa |
31333987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 31321644 - 31321591
Alignment:
| Q |
241 |
aattctctgtccatcacttctgtgagtacctacctcaactgctccagctgctat |
294 |
Q |
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||||||||| |||||||||||||| || ||||| ||||||||||| |||||||| |
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| T |
31321644 |
aattctctgaccatcacttctgtgtgttcctacttcaactgctcctgctgctat |
31321591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 31333897 - 31333844
Alignment:
| Q |
241 |
aattctctgtccatcacttctgtgagtacctacctcaactgctccagctgctat |
294 |
Q |
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||||||||| ||| |||||||||| || ||||| ||||||||||| |||||||| |
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| T |
31333897 |
aattctctgaccaccacttctgtgtgttcctacttcaactgctcctgctgctat |
31333844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 2027 - 2080
Alignment:
| Q |
241 |
aattctctgtccatcacttctgtgagtacctacctcaactgctccagctgctat |
294 |
Q |
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||||||||| ||| |||||||||| || ||||| ||||||||||| |||||||| |
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| T |
2027 |
aattctctgaccaccacttctgtgtgttcctacttcaactgctcctgctgctat |
2080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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