View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3727R-Insertion-2 (Length: 850)
Name: NF3727R-Insertion-2
Description: NF3727R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3727R-Insertion-2 |
 | |
|
| [»] scaffold0054 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 698; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 698; E-Value: 0
Query Start/End: Original strand, 8 - 838
Target Start/End: Original strand, 20426077 - 20426902
Alignment:
| Q |
8 |
attgtggaacccagctacccatgaatctaaggtcattcctcctagtccggctgagtcgataccaccttatcgagaggcttcgactttatttcatggattt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20426077 |
attgtggaacccagctacccatgaatctaaggtcattcctcctagtccggctgagtcgataccaccttatcgagaggcttcgactttatttcatggattt |
20426176 |
T |
|
| Q |
108 |
ggttatgaccatattcaagatgacatttaagattattaggtatgtgcatttttgtcgaataaatggtggaggtcttcaacttctcaatgtgcgacgggaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20426177 |
ggttatgaccatattcaagatgacatt-aagattattaggtatgtgcatttttgtcgaataaatggtggaggtcttcaacttctcaatgtgcgacgggaa |
20426275 |
T |
|
| Q |
208 |
gatgtgccatggaatgaaatatcctatgaaccctttatgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcctaattgc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20426276 |
gatgtgccatggaatgaaatatcctatgaacc-tttatgggagatttatagcgtaagatgtaactcttggagaaaacttgatttcaatatgcctaattgc |
20426374 |
T |
|
| Q |
308 |
tggagtggyagttcaaatgagcgattgtacttgaatggaatatgtcattggtggcatgtgactgaagatcaggatggacatttcttggtgtcatttgact |
407 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20426375 |
tggagtggtagttcaaatgagcgattgtacttgaatggaatatgtcattggtggcatgtgactgaagatcaggatggacattttttggtgtcatttgact |
20426474 |
T |
|
| Q |
408 |
ttagcaatgagatgnnnnnnnacaacagagatacccttagacataccttcagacatagataccaatttgagtgttagattaacaaagagacatttggtgg |
507 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20426475 |
ttagcaatgagatg-ttttttacaacagagatacccttagacatacctttagacataggtaccaatttgagttttagattaacaaagagacatttggtgg |
20426573 |
T |
|
| Q |
508 |
tattgaatggatccattgcttcgatctcatggtatttagatacaactacttttcacatatcaattttaagtgaactcgggcgtgaaggaatcgtggacca |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20426574 |
tattgaatggatccattgcttcgatctcatggtatttagatacaactacttttcacatatcaattttaagtgaactc-ggcgtgaaggaatcgtggacca |
20426672 |
T |
|
| Q |
608 |
aactctttgttgytggaccattgctctacattgagcgtcttattggagtggggaagaacggtgatattttcctaaaacaaaaagatgggtcagctagtct |
707 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| ||||||||||||| |
|
|
| T |
20426673 |
aactctttgttgttggaccattgctctacattgagcgtcttattggagtggggatgaacggtgatattttcctaatataaaaagat-ggtcagctagtct |
20426771 |
T |
|
| Q |
708 |
gttttgatttacatacccaggagactgaaaaacttgggtgttatggaaggcgttttaatattgcaatttacaagaaaagccttg-ttcgattggaggaat |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20426772 |
gttttgatttacatacccaggagactgaaaaacttgggtgttatgggaggcgtttttatattgcaatttacaagaaaagccttgtttcgattggaggaat |
20426871 |
T |
|
| Q |
807 |
taatcagtaattggttttttcatgtttctacc |
838 |
Q |
| |
|
||||||||||||| |||||||||||| |||| |
|
|
| T |
20426872 |
aaatcagtaattgg-tttttcatgtttttacc |
20426902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 8 - 475
Target Start/End: Complemental strand, 20456040 - 20455573
Alignment:
| Q |
8 |
attgtggaacccagctacccatgaatctaaggtcattcctcctagtccggctgagtcgataccaccttatcgagaggcttcgactttatttcatggattt |
107 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||||||| | | || |||| || || ||||||||||||||| | |||| ||||||||||| |
|
|
| T |
20456040 |
attgtggaacctagctacccatgaattttaggtcattcctcccaaccttgccgagtatgtatcagcttatcgagaggctttaaatttagttcatggattt |
20455941 |
T |
|
| Q |
108 |
ggttatgaccatattcaagatgacatttaag--attattaggtatgtgcatttttgtcgaataaatggtggaggtcttcaacttctcaatgtgcgacggg |
205 |
Q |
| |
|
| ||||||||||||||||||||||||| | ||||||| | |||| |||||||||| |||||||||| ||||||||| ||||||||||||| ||| | |
|
|
| T |
20455940 |
gattatgaccatattcaagatgacattacaattattattatgcatgtacatttttgtcaaataaatggtcgaggtcttctacttctcaatgtgtgacacg |
20455841 |
T |
|
| Q |
206 |
aagatgtgccatggaatgaaatatcctatgaaccctttatgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcctaatt |
305 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | |||||| ||||||||||||||| |||||||||||||||||| || |||||||||||||||||| | |
|
|
| T |
20455840 |
aagatgtgccatggaataaaatatcctatgaaac-tttatgagagatttatagtgtaagatgtaactcttggaggacacatgatttcaatatgcctaaat |
20455742 |
T |
|
| Q |
306 |
gctggagtggyagttcaaatgagcgattgtacttgaatggaatatgtcattggtggcatgtgactgaagatcaggatggacatttcttggtgtcatttga |
405 |
Q |
| |
|
| |||| | ||||||||||| ||||||||| || |||||||||||||||||||| |||| |||||||||| || || |||||| |||||||| ||| | |
|
|
| T |
20455741 |
gttggaccgatagttcaaatgatcgattgtacatggatggaatatgtcattggtggtatgtaactgaagatcggggtgaacattttttggtgtcgtttta |
20455642 |
T |
|
| Q |
406 |
ctttagcaatgagatgnnnnnnnacaacagagatacccttagacataccttcagacatagataccaattt |
475 |
Q |
| |
|
|| | ||||||||| |||||| | ||||||||||||||| |||| |||||| || ||||||| |
|
|
| T |
20455641 |
ctat-gcaatgagagttttttttacaacacatatacccttagacataacttcggacatatatcccaattt |
20455573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 492 - 674
Target Start/End: Original strand, 20453022 - 20453207
Alignment:
| Q |
492 |
aagagacatttggtggtattgaatggatccattgcttcgatctcatggtatttag---atacaactacttttcacatatcaattttaagtgaactcgggc |
588 |
Q |
| |
|
|||||||| |||||| | | ||| |||| |||||||||||||||||||||||| ||| || || || |||||||||||||||| |||| |||| | |
|
|
| T |
20453022 |
aagagacacttggtgctgcttaatagatcaattgcttcgatctcatggtatttaataaataaaattatttatcacatatcaattttaggtgagttcgg-c |
20453120 |
T |
|
| Q |
589 |
gtgaaggaatcgtggaccaaactctttgttgytgga-ccattgctctacattgagcgtcttattggagtggggaagaacggtgatat |
674 |
Q |
| |
|
||||||||||| || || ||| ||||||||| | || ||||| |||| ||||||||| |||||||| ||| |||||||||||||| |
|
|
| T |
20453121 |
gtgaaggaatcatgtactaaattctttgttgtttgaaccattttcctacgttgagcgtcatattggagcgggaaagaacggtgatat |
20453207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 4877544 - 4877608
Alignment:
| Q |
238 |
ccctttatgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgccta |
302 |
Q |
| |
|
|||||| ||||||||||||||| || || |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4877544 |
ccctttttgggagatttatagtctaagaagtaactcttggaagaaacttgatttcaatatgccta |
4877608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 54290838 - 54290894
Alignment:
| Q |
8 |
attgtggaacccagctacccatgaatctaaggtcattcctcctagtccggctgagtc |
64 |
Q |
| |
|
||||||||||||||||||||| ||| || ||||||||||| |||||||| |||||| |
|
|
| T |
54290838 |
attgtggaacccagctacccacaaatttacggtcattcctcatagtccggttgagtc |
54290894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 661
Target Start/End: Original strand, 9569237 - 9569306
Alignment:
| Q |
592 |
aaggaatcgtggaccaaactctttgttgytggaccattgctctacattgagcgtcttattggagtgggga |
661 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||| ||| | ||||||||||| ||| |||||||||| |
|
|
| T |
9569237 |
aaggaatcgtggaccaaactcttccttgttggaccgttgtcttgcattgagcgtcctatcggagtgggga |
9569306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 544 - 614
Target Start/End: Complemental strand, 48742063 - 48741994
Alignment:
| Q |
544 |
tagatacaactacttttcacatatcaattttaagtgaactcgggcgtgaaggaatcgtggaccaaactctt |
614 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||| |||||||| || ||||||||||| ||||| |||||||| |
|
|
| T |
48742063 |
tagagacaactaccttttgcatatcaattttaggtgaactc-ggtgtgaaggaatcttggactaaactctt |
48741994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 7e-51; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 6 - 744
Target Start/End: Complemental strand, 15338765 - 15338029
Alignment:
| Q |
6 |
tcattgtggaacccagctacccatgaatctaaggtcattcctcctagtccggctgagtcgataccaccttatcgagaggcttcgactttat-ttcatgga |
104 |
Q |
| |
|
||||||||||||| | |||||||||||| ||||||||||| | ||||| ||||| | ||||||||||| |||||||| | || || |||||||| |
|
|
| T |
15338765 |
tcattgtggaacctaactacccatgaattcaaggtcattccactcagtcccattgagtttgtcccaccttatcgtgaggcttc-agttgatgttcatgga |
15338667 |
T |
|
| Q |
105 |
tttggttatgaccatattcaagatgacatttaagattattaggtatgtgcatttttgtcgaataaatggtggaggtcttcaacttctcaatgtgcgacgg |
204 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||||||||||||||| | || ||| || ||||| | |||| ||||| ||| ||||||||||| || |
|
|
| T |
15338666 |
tttggttatgactatattaaagatgac-tttaagattattaggtatatacaatttactccaataagtagtgggcgtcttaaacgtctcaatgtgcaacat |
15338568 |
T |
|
| Q |
205 |
gaagatgtgccatggaatgaaatatcctatgaaccctttatgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcctaat |
304 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| | ||||||||||| || || | || |||||||||| ||||| |||| | ||||||||||| |
|
|
| T |
15338567 |
gaagatgtgtcatggaatgaaatatcctatgaacc-tgagtgggagatttacagcctaaggtgcaactcttggaagaaacatgatgttaatatgcctaag |
15338469 |
T |
|
| Q |
305 |
tgctggagtggyagttcaaatgagcgattgtacttgaatggaatatgtcattggtggcatgtgactgaagatcaggatggacatttcttggtgtcatttg |
404 |
Q |
| |
|
| ||| || | ||||| |||| | ||||||| | ||||| | | |||||||||| ||| | |||| || |||| |||| | || || ||||||| |
|
|
| T |
15338468 |
cgttggtgtagtggttcatatgaaccattgtacattgatggattgtctcattggtggtctgtaagtgaaaattgtgatgaacatcttttagtttcatttg |
15338369 |
T |
|
| Q |
405 |
actttagcaatgagatgnnnnnnnacaacagagatacccttagacataccttcagacatagataccaatttgagtgttagattaacaaagagacatttgg |
504 |
Q |
| |
|
| || ||||| |||||| || ||| ||||| |||||||||| | |||||||||||| ||||| | || | || | |||| |||| |
|
|
| T |
15338368 |
atttgagcaacgagatgtttttt-acgacaaccatacctatagacataccgttagacatagatacaaattttcatcttggttttgtgtatagacgattgg |
15338270 |
T |
|
| Q |
505 |
tggtattgaatggatccattgcttcgatctcatggtattta---gatacaactacttttcacatatcaattttaagtgaactcgggcgtgaaggaatcgt |
601 |
Q |
| |
|
|||| | ||| ||||||||||||||||||||||||||||| |||| ||||| |||| ||||||||||||| |||||||||| |||||| ||||| | |
|
|
| T |
15338269 |
tggtgcttaatagatccattgcttcgatctcatggtatttattagataaaactattttttacatatcaattttgggtgaactcgg-cgtgaaagaatcat |
15338171 |
T |
|
| Q |
602 |
ggaccaaactctttgttgytggaccattgctctacattgagcgtcttattggagtggggaagaacggtgatattttcctaaaacaaaaagatgggtcagc |
701 |
Q |
| |
|
|||| ||||| ||||||| ||||||| | | |||||||| ||||||||||||| ||| ||||| |||||||| ||| | || |||||||| ||| ||| |
|
|
| T |
15338170 |
ggactaaactatttgttgttggaccacttccttacattgatcgtcttattggagcgggaaagaatggtgatatattcttccaaaaaaaagat-ggtaagc |
15338072 |
T |
|
| Q |
702 |
tagtctgttttgatttacatacccaggagactgaaaaacttgg |
744 |
Q |
| |
|
|||||||||| |||| ||| ||| |||||||| ||||||| |
|
|
| T |
15338071 |
tagtctgtttcagtttaagtactcagaagactgaagaacttgg |
15338029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 6 - 744
Target Start/End: Complemental strand, 15427830 - 15427094
Alignment:
| Q |
6 |
tcattgtggaacccagctacccatgaatctaaggtcattcctcctagtccggctgagtcgataccaccttatcgagaggcttcgactttat-ttcatgga |
104 |
Q |
| |
|
||||||||||||| | |||||||||||| ||||||||||| | ||||| ||||| | ||||||||||| |||||||| | || || |||||||| |
|
|
| T |
15427830 |
tcattgtggaacctaactacccatgaattcaaggtcattccactcagtcccattgagtttgtcccaccttatcgtgaggcttc-agttgatgttcatgga |
15427732 |
T |
|
| Q |
105 |
tttggttatgaccatattcaagatgacatttaagattattaggtatgtgcatttttgtcgaataaatggtggaggtcttcaacttctcaatgtgcgacgg |
204 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||||||||||||||| | || ||| || ||||| | |||| ||||| ||| ||||||||||| || |
|
|
| T |
15427731 |
tttggttatgactatattaaagatgac-tttaagattattaggtatatacaatttactccaataagtagtgggcgtcttaaacgtctcaatgtgcaacat |
15427633 |
T |
|
| Q |
205 |
gaagatgtgccatggaatgaaatatcctatgaaccctttatgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcctaat |
304 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| | ||||||||||| || || | || |||||||||| ||||| |||| | ||||||||||| |
|
|
| T |
15427632 |
gaagatgtgtcatggaatgaaatatcctatgaacc-tgagtgggagatttacagcctaaggtgcaactcttggaagaaacatgatgttaatatgcctaag |
15427534 |
T |
|
| Q |
305 |
tgctggagtggyagttcaaatgagcgattgtacttgaatggaatatgtcattggtggcatgtgactgaagatcaggatggacatttcttggtgtcatttg |
404 |
Q |
| |
|
| ||| || | ||||| |||| | ||||||| | ||||| | | |||||||||| ||| | |||| || |||| |||| | || || ||||||| |
|
|
| T |
15427533 |
cgttggtgtagtggttcatatgaaccattgtacattgatggattgtctcattggtggtctgtaagtgaaaattgtgatgaacatcttttagtttcatttg |
15427434 |
T |
|
| Q |
405 |
actttagcaatgagatgnnnnnnnacaacagagatacccttagacataccttcagacatagataccaatttgagtgttagattaacaaagagacatttgg |
504 |
Q |
| |
|
| || ||||| |||||| || ||| ||||| |||||||||| | |||||||||||| ||||| | || | || | |||| |||| |
|
|
| T |
15427433 |
atttgagcaacgagatgtttttt-acgacaaccatacctatagacataccgttagacatagatacaaattttcatcttggttttgtgtatagacgattgg |
15427335 |
T |
|
| Q |
505 |
tggtattgaatggatccattgcttcgatctcatggtattta---gatacaactacttttcacatatcaattttaagtgaactcgggcgtgaaggaatcgt |
601 |
Q |
| |
|
|||| | ||| ||||||||||||||||||||||||||||| |||| ||||| |||| ||||||||||||| |||||||||| |||||| ||||| | |
|
|
| T |
15427334 |
tggtgcttaatagatccattgcttcgatctcatggtatttattagataaaactattttttacatatcaattttgggtgaactcgg-cgtgaaagaatcat |
15427236 |
T |
|
| Q |
602 |
ggaccaaactctttgttgytggaccattgctctacattgagcgtcttattggagtggggaagaacggtgatattttcctaaaacaaaaagatgggtcagc |
701 |
Q |
| |
|
|||| ||||| ||||||| ||||||| | | |||||||| ||||||||||||| ||| ||||| |||||||| ||| | || |||||||| ||| ||| |
|
|
| T |
15427235 |
ggactaaactatttgttgttggaccacttccttacattgatcgtcttattggagcgggaaagaatggtgatatattcttccaaaaaaaagat-ggtaagc |
15427137 |
T |
|
| Q |
702 |
tagtctgttttgatttacatacccaggagactgaaaaacttgg |
744 |
Q |
| |
|
|||||||||| |||| ||| ||| |||||||| ||||||| |
|
|
| T |
15427136 |
tagtctgtttcagtttaagtactcagaagactgaagaacttgg |
15427094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 6 - 744
Target Start/End: Complemental strand, 15519134 - 15518398
Alignment:
| Q |
6 |
tcattgtggaacccagctacccatgaatctaaggtcattcctcctagtccggctgagtcgataccaccttatcgagaggcttcgactttat-ttcatgga |
104 |
Q |
| |
|
||||||||||||| | |||||||||||| ||||||||||| | ||||| ||||| | ||||||||||| |||||||| | || || |||||||| |
|
|
| T |
15519134 |
tcattgtggaacctaactacccatgaattcaaggtcattccactcagtcccattgagtttgtcccaccttatcgtgaggcttc-agttgatgttcatgga |
15519036 |
T |
|
| Q |
105 |
tttggttatgaccatattcaagatgacatttaagattattaggtatgtgcatttttgtcgaataaatggtggaggtcttcaacttctcaatgtgcgacgg |
204 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||||||||||||||| | || ||| || ||||| | |||| ||||| ||| ||||||||||| || |
|
|
| T |
15519035 |
tttggttatgactatattaaagatgac-tttaagattattaggtatatacaatttactccaataagtagtgggcgtcttaaacgtctcaatgtgcaacat |
15518937 |
T |
|
| Q |
205 |
gaagatgtgccatggaatgaaatatcctatgaaccctttatgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcctaat |
304 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| | ||||||||||| || || | || |||||||||| ||||| |||| | ||||||||||| |
|
|
| T |
15518936 |
gaagatgtgtcatggaatgaaatatcctatgaacc-tgagtgggagatttacagcctaaggtgcaactcttggaagaaacatgatgttaatatgcctaag |
15518838 |
T |
|
| Q |
305 |
tgctggagtggyagttcaaatgagcgattgtacttgaatggaatatgtcattggtggcatgtgactgaagatcaggatggacatttcttggtgtcatttg |
404 |
Q |
| |
|
| ||| || | ||||| |||| | ||||||| | ||||| | | |||||||||| ||| | |||| || |||| |||| | || || ||||||| |
|
|
| T |
15518837 |
cgttggtgtagtggttcatatgaaccattgtacattgatggattgtctcattggtggtctgtaagtgaaaattgtgatgaacatcttttagtttcatttg |
15518738 |
T |
|
| Q |
405 |
actttagcaatgagatgnnnnnnnacaacagagatacccttagacataccttcagacatagataccaatttgagtgttagattaacaaagagacatttgg |
504 |
Q |
| |
|
| || ||||| |||||| || ||| ||||| |||||||||| | |||||||||||| ||||| | || | || | |||| |||| |
|
|
| T |
15518737 |
atttgagcaacgagatgtttttt-acgacaaccatacctatagacataccgttagacatagatacaaattttcatcttggttttgtgtatagacgattgg |
15518639 |
T |
|
| Q |
505 |
tggtattgaatggatccattgcttcgatctcatggtattta---gatacaactacttttcacatatcaattttaagtgaactcgggcgtgaaggaatcgt |
601 |
Q |
| |
|
|||| | ||| ||||||||||||||||||||||||||||| |||| ||||| |||| ||||||||||||| |||||||||| |||||| ||||| | |
|
|
| T |
15518638 |
tggtgcttaatagatccattgcttcgatctcatggtatttattagataaaactattttttacatatcaattttgggtgaactcgg-cgtgaaagaatcat |
15518540 |
T |
|
| Q |
602 |
ggaccaaactctttgttgytggaccattgctctacattgagcgtcttattggagtggggaagaacggtgatattttcctaaaacaaaaagatgggtcagc |
701 |
Q |
| |
|
|||| ||||| ||||||| ||||||| | | |||||||| ||||||||||||| ||| ||||| |||||||| ||| | || |||||||| ||| ||| |
|
|
| T |
15518539 |
ggactaaactatttgttgttggaccacttccttacattgatcgtcttattggagcgggaaagaatggtgatatattcttccaaaaaaaagat-ggtaagc |
15518441 |
T |
|
| Q |
702 |
tagtctgttttgatttacatacccaggagactgaaaaacttgg |
744 |
Q |
| |
|
|||||||||| |||| ||| ||| |||||||| ||||||| |
|
|
| T |
15518440 |
tagtctgtttcagtttaagtactcagaagactgaagaacttgg |
15518398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 195 - 674
Target Start/End: Original strand, 51869646 - 51870125
Alignment:
| Q |
195 |
tgtgcgacgggaagatgtgccatggaatgaaatatcctatgaaccctttatgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaa |
294 |
Q |
| |
|
||||| |||| |||||||| || | |||||||||||||||||||| |||||||||||||||||| | || |||||||||||| | ||||||| | || |
|
|
| T |
51869646 |
tgtgcaacggaaagatgtgtcacgtaatgaaatatcctatgaacc-tttatgggagatttatagccaaaaatataactcttggagaatacttgatgttaa |
51869744 |
T |
|
| Q |
295 |
tatgcctaattgctggagtggyagttcaaatgagcgattgtacttgaatggaatatgtcattggtggcatgtgactgaagatcaggatggacatttcttg |
394 |
Q |
| |
|
||||||| || | || || ||||||||| | ||||| || || ||||||| || ||||| | | || | |||| || | |||| |||||||||| |
|
|
| T |
51869745 |
tatgcctgtgtgtttgattgatagttcaaatcaacgattatatatggatggaatttgccattgatagtctgaaagtgaaaattatgatgaacatttcttg |
51869844 |
T |
|
| Q |
395 |
gtgtcatttgactttagcaatgagatgnnnnnnnacaacagagatacccttagacataccttcagacatagataccaatttgagtgttagattaacaaag |
494 |
Q |
| |
|
||||||||| |||| ||||||||| || |||||| |||||||||||||| |||||||| || || ||||||| | | ||| || || |
|
|
| T |
51869845 |
gtgtcatttaacttgagcaatgagttgttttta-acaacaatcatacccttagacatgccttcagatatgtatcccaattttatttatagttttgtgaat |
51869943 |
T |
|
| Q |
495 |
agacatttggtggtattgaatggatccattgcttcgatctcatggtattta---gatacaactacttttcacatatcaattttaagtgaactcgggcgtg |
591 |
Q |
| |
|
||||| |||||||| || |||||||| |||| | |||| |||||||||||| |||| |||||||| |||||||||||||||| |||||||| |||||| |
|
|
| T |
51869944 |
agacacttggtggtgtttaatggatcaattgttacgatatcatggtatttatcagataaaactacttatcacatatcaattttaggtgaactc-ggcgtg |
51870042 |
T |
|
| Q |
592 |
aaggaatcgtggaccaaactctttgttgytggaccattgctctacattgagcgtcttattggagtggggaagaacggtgatat |
674 |
Q |
| |
|
||||||| | ||| ||||||||| ||| ||| |||| ||||||||| ||||||||||||| || |||||| ||||||| |
|
|
| T |
51870043 |
aaggaattatagactaaactctttattgttgggtcattttcctacattgatcgtcttattggagcaggaaagaactgtgatat |
51870125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 521 - 655
Target Start/End: Complemental strand, 44937901 - 44937765
Alignment:
| Q |
521 |
cattgcttcgatctcatggtattta---gatacaactacttttcacatatcaattttaagtgaactcgggcgtgaaggaatcgtggaccaaactctttgt |
617 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||| ||||| ||||| ||||||||||| |
|
|
| T |
44937901 |
cattgcttcgatctcgtggtatttattagatacaactacttttcacatatcaattttgggtgaactcgg-cgtgaaagaatcatggactaaactctttgt |
44937803 |
T |
|
| Q |
618 |
tgytggaccattgctctacattgagcgtcttattggag |
655 |
Q |
| |
|
|| ||||||| | | |||||| |||||||||||||||| |
|
|
| T |
44937802 |
tgttggaccactaccctacatggagcgtcttattggag |
44937765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 8 - 303
Target Start/End: Complemental strand, 44938411 - 44938118
Alignment:
| Q |
8 |
attgtggaacccagctacccatgaatctaaggtcattcctcctagtccggctgagtcgataccaccttatcgagaggcttcgactttatttcatggattt |
107 |
Q |
| |
|
||||||||| |||||||||||||||| ||| ||||||||| || || | |||||| ||||||||||||| |||| ||||| | ||||||| ||| |
|
|
| T |
44938411 |
attgtggaatccagctacccatgaattcaagaccattcctcccagccccgttgagtctttaccaccttatcgggaggtttcgattggtcttcatgggttt |
44938312 |
T |
|
| Q |
108 |
ggttatgaccatattcaagatgacatttaagattattaggtatgtgcatttttgtcgaataaatggtggaggtcttcaacttctcaatgtgcgacgggaa |
207 |
Q |
| |
|
||||||||||||||| |||| ||| ||||||||||||||||| | || || | ||||| | | || ||||| ||| |||| ||||||| ||| |
|
|
| T |
44938311 |
ggttatgaccatattaaagaggac-tttaagattattaggtacatacaattcacttcaataagtagcggtcgtcttgaacgtctccatgtgcgttatgaa |
44938213 |
T |
|
| Q |
208 |
gatgtgccatggaatgaaatatcctatgaaccctttatgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcctaa |
303 |
Q |
| |
|
|||||| | ||||| |||||||| ||| ||||| ||||||||||||||| || | ||||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
44938212 |
gatgtgtcgtggaacgaaatatcatatcaaccc-gaatgggagatttatagcttaaggtgtaattcttggaagaaacttgatgtcaatatgcctaa |
44938118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 517 - 674
Target Start/End: Complemental strand, 44918594 - 44918435
Alignment:
| Q |
517 |
gatccattgcttcgatctcatggtattt---agatacaactacttttcacatatcaattttaagtgaactcgggcgtgaaggaatcgtggaccaaactct |
613 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||| ||| ||||||||||||||||||| ||||||| || | ||| ||||||||||| ||||||| |
|
|
| T |
44918594 |
gatccgtttcttcgatctcatggtattattcagatacacctatttttcacatatcaattttaggtgaacttggtgg-gaaagaatcgtggactaaactct |
44918496 |
T |
|
| Q |
614 |
ttgttgytggaccattgctctacattgagcgtcttattggagtggggaagaacggtgatat |
674 |
Q |
| |
|
|||||| ||||||| ||| ||| ||| || || |||| |||| ||||| || |||||||| |
|
|
| T |
44918495 |
ttgttgttggaccactgccctatattaagtgttttatcggagcagggaaaaatggtgatat |
44918435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 210 - 304
Target Start/End: Complemental strand, 44918899 - 44918806
Alignment:
| Q |
210 |
tgtgccatggaatgaaatatcctatgaaccctttatgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcctaat |
304 |
Q |
| |
|
|||||||||||| |||||||| |||||||| | ||||||||||||||| || | |||||||||||||| ||||||||| || ||||||||||| |
|
|
| T |
44918899 |
tgtgccatggaacgaaatatcttatgaacc-tgaatgggagatttatagcctaaggtgtaactcttggagtaaacttgatatcgatatgcctaat |
44918806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 209 - 304
Target Start/End: Complemental strand, 44912904 - 44912810
Alignment:
| Q |
209 |
atgtgccatggaatgaaatatcctatgaaccctttatgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcctaat |
304 |
Q |
| |
|
|||| |||||||| |||||||| |||||| | | ||||||||||||||| || | |||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
44912904 |
atgttccatggaacgaaatatcttatgaatc-tgaatgggagatttatagcctaaggtgtaactcttggagtaaacttgatatcaatatgcctaat |
44912810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 627
Target Start/End: Complemental strand, 44912585 - 44912517
Alignment:
| Q |
558 |
tttcacatatcaattttaagtgaactcgggcgtgaaggaatcgtggaccaaactctttgttgytggacca |
627 |
Q |
| |
|
||||||||||| ||||| ||||||| || |||||||||||||| || ||||||||||||| ||||||| |
|
|
| T |
44912585 |
tttcacatatcgattttgggtgaacttggt-gtgaaggaatcgtgaactaaactctttgttgttggacca |
44912517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 34325041 - 34325099
Alignment:
| Q |
243 |
tatgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcct |
301 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
34325041 |
tatgggagatttatagtttaagatgtaacacttgggaaaaacttgatgtcaatatgcct |
34325099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 549 - 614
Target Start/End: Complemental strand, 42637423 - 42637359
Alignment:
| Q |
549 |
acaactacttttcacatatcaattttaagtgaactcgggcgtgaaggaatcgtggaccaaactctt |
614 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
42637423 |
acaactacttttcacatatcaattttgggtgaagtcggg-gtgaaggaatcatggaccaaactctt |
42637359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 626
Target Start/End: Original strand, 30651529 - 30651641
Alignment:
| Q |
513 |
aatggatccattgcttcgatctcatggtatttagatacaactacttttcacatatcaattttaagtgaactcgggcgtgaaggaatcgtggaccaaactc |
612 |
Q |
| |
|
||||| |||||||||| |||||| |||||| |||||| || || |||||||||||| ||||| ||||||| || |||| ||||| ||||| |||||| |
|
|
| T |
30651529 |
aatggttccattgctttgatctcttggtatgaagatacgaccacctttcacatatcagttttaggtgaact-tggtgtgagtgaatcatggactaaactc |
30651627 |
T |
|
| Q |
613 |
tttgttgytggacc |
626 |
Q |
| |
|
||| || |||||| |
|
|
| T |
30651628 |
tttattattggacc |
30651641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 622
Target Start/End: Original strand, 40549282 - 40549344
Alignment:
| Q |
559 |
ttcacatatcaattttaagtgaactcgggcgtgaaggaatcgtggaccaaactctttgttgytg |
622 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||||||||||| |||| |||||||||||||| || |
|
|
| T |
40549282 |
ttcacatatcaattttgggtgaagtcggt-gtgaaggaatcatggatcaaactctttgttgttg |
40549344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 552 - 661
Target Start/End: Complemental strand, 39890 - 39782
Alignment:
| Q |
552 |
actacttttcacatatcaattttaagtgaactcgggcgtgaaggaatcgtggaccaaactctttgttgytggaccattgctctacattgagcgtcttatt |
651 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||| | ||||||||||||| |||||||||| || |||||| ||| | | ||||||||| ||| |
|
|
| T |
39890 |
actacttttcacatagcaattttgggtgaactc-ggcattaaggaatcgtggatcaaactctttactgttggaccgttgtcttgcgttgagcgtcctatc |
39792 |
T |
|
| Q |
652 |
ggagtgggga |
661 |
Q |
| |
|
|||||||||| |
|
|
| T |
39791 |
ggagtgggga |
39782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 552 - 614
Target Start/End: Complemental strand, 33539 - 33478
Alignment:
| Q |
552 |
actacttttcacatatcaattttaagtgaactcgggcgtgaaggaatcgtggaccaaactctt |
614 |
Q |
| |
|
||||||||| ||||| ||||||| |||||||||| | | ||||||||||||||||||||||| |
|
|
| T |
33539 |
actacttttgacatagcaattttgggtgaactcgg-cattaaggaatcgtggaccaaactctt |
33478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 549 - 630
Target Start/End: Complemental strand, 32740789 - 32740709
Alignment:
| Q |
549 |
acaactacttttcacatatcaattttaagtgaactcgggcgtgaaggaatcgtggaccaaactctttgttgytggaccattg |
630 |
Q |
| |
|
||||||||||||| | |||||||||| ||||| |||| | | ||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
32740789 |
acaactacttttctcgtatcaattttgggtgaattcgg-cataaaggaatcgtggaccaaactcttcattgttggaccattg |
32740709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 590 - 665
Target Start/End: Complemental strand, 32960768 - 32960693
Alignment:
| Q |
590 |
tgaaggaatcgtggaccaaactctttgttgytggaccattgctctacattgagcgtcttattggagtggggaagaa |
665 |
Q |
| |
|
|||||||||| |||| |||||||||| ||| | ||||||||| | ||||||||| ||| |||||||||||||| |
|
|
| T |
32960768 |
tgaaggaatcttggatcaaactctttattgttagaccattgccttgtgttgagcgtcctatgggagtggggaagaa |
32960693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 30249508 - 30249565
Alignment:
| Q |
244 |
atgggagatttatagtgtaggatgtaactcttggaggaaacttgatttcaatatgcct |
301 |
Q |
| |
|
|||||||||||||||| || |||||||| |||||| ||||||||| ||||||||||| |
|
|
| T |
30249508 |
atgggagatttatagtctaagatgtaacacttggaaaaaacttgatgtcaatatgcct |
30249565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University