View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3727R-Insertion-3 (Length: 843)
Name: NF3727R-Insertion-3
Description: NF3727R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3727R-Insertion-3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 758; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 758; E-Value: 0
Query Start/End: Original strand, 9 - 843
Target Start/End: Complemental strand, 2154837 - 2154007
Alignment:
| Q |
9 |
tgaagtccaggtccaagcccaaacccaagaccaggcccaaccacctgagaacgagaagaatcttccatcattgcaggctgattttccatgttcggtttcg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2154837 |
tgaagtccaggtccaagcccaaacccaagaccaggcccaaccacctgagaacgagaagaatcttccatcattgcaggctgattttccatgctcggtttcg |
2154738 |
T |
|
| Q |
109 |
ccgtacgtttctcatctgaaatccgatactcgcctgaaggagattgtgtttcaaactacgccggaggttgaattaaaatcatccgccgtaaacgacggag |
208 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2154737 |
ccgtacgtttctcacctgaaatccgatactcgcctgaaggagattgtgtttcaaactacgccggaggttgaattaaaatcatccgccgtaaacgacggag |
2154638 |
T |
|
| Q |
209 |
gaagtggatctgagaaacggagattaaagagactctggattttatcgaatttgttccgaacaagaccaaattcagatcaagaatcatgcgagatttcatc |
308 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2154637 |
gaagtggatctgagaaacggagattgaagagattctggattttatcgaatttgttccgaacaagaacaaattcagatcaagaatcatgcgagatttcatc |
2154538 |
T |
|
| Q |
309 |
atcggtgctagcatcagcatctcctccgtcagcgacgacggttcccgctcgccggaaaaacaacaaccgcgttagtgatcaacggagatgccgtcaaata |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2154537 |
atcggtgctagcatcagcatctcctccgtcagcgacgacggttcccgctcgccggaaaaacaacaaccgcgttagtgatcaacggagatgccgtcaaata |
2154438 |
T |
|
| Q |
409 |
gatcggggagcatcaccggtggataatttcgaaacactagaccgatcggaatttgtaaactcgtcggaatcttcaccgcggagtcggaacaagacgacgg |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2154437 |
gatcggggagcatcaccggtggataatttcgaaacactagaccgatcggaatttgtaaactcgtcggaatcttcaccgcggagtcggaacaagacgacgg |
2154338 |
T |
|
| Q |
509 |
tgatgacgacggcgcggcggtcgaagctaggttacgccgggaagagtttagctagtatggcgttttgtttgagtccgttggctcgggcgagtccgaatcg |
608 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2154337 |
tgatgacgacggcgcggcggtcgaagctaggttacgccgggaagagtttagctagtatggcgttttgtttgagtccgttggttcgggcgagtccgaatcg |
2154238 |
T |
|
| Q |
609 |
gaactggaataagggattgggacaggaattgaatgcgggtggggtgcaccatatttccagtgcagcttcattttgcgccagtcgatctaggaagcttgtt |
708 |
Q |
| |
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| T |
2154237 |
gaactggaataagggattgggacaggaattgaatgcgggtggggtgcaccatatttccagtgcagcttcattttgcgccagtcgatcaaggaagcttgtt |
2154138 |
T |
|
| Q |
709 |
gatcttggaagacccgtgaataaacgttgatgnnnnnnnnnnnnacggtggtaattcctttttacttgttgttataattcttctccatgtattgtatact |
808 |
Q |
| |
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| T |
2154137 |
gatcttggaagacccgtgaataaacgttgatg----ttttttttacggtggtaattcctttttacttgttgtcataattcttctccatgtattgtatact |
2154042 |
T |
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| Q |
809 |
gtatatagtacgctcactctgtatacaatgttaaa |
843 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| |
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| T |
2154041 |
gtatatagtactctcactctgtatacaatgttaaa |
2154007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 2e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 277 - 543
Target Start/End: Original strand, 40316349 - 40316611
Alignment:
| Q |
277 |
aattcagatcaagaatcatgcgagatttcatcatcggtgctagcatcagcatctcctccgtcagcgacgacggttcccgctcgccggaaaaacaacaacc |
376 |
Q |
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|||||| ||| ||||||||| ||| |||||||||||||| || |||||| ||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
40316349 |
aattcatatcgagaatcatgtgagctttcatcatcggtg------tcggcatctactccgtcagcgacgacggttcccactcgtcggaaaaacaacaaca |
40316442 |
T |
|
| Q |
377 |
gcgttagtgatcaacggagatgccgtcaaatagatcggggagcatcaccggtggataatttcgaaacactagaccgatcggaatttgtaaactcgtcgga |
476 |
Q |
| |
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| T |
40316443 |
gcgttagtgatcaacagagatgctgtcaattagatcgaggagcatcaccaatggataatttcgaaacaatagattgatcagaatttgtaacctcgtcgga |
40316542 |
T |
|
| Q |
477 |
atcttcaccgcggagtcggaacaagacgac--ggtgatgacgacggcgcggcggtcgaagctaggttac |
543 |
Q |
| |
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| T |
40316543 |
atctttacctcggagtcggaacaagacgacggggcgatgacgacgatgcggcggtcgaggctaggttac |
40316611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 277 - 543
Target Start/End: Original strand, 40326423 - 40326685
Alignment:
| Q |
277 |
aattcagatcaagaatcatgcgagatttcatcatcggtgctagcatcagcatctcctccgtcagcgacgacggttcccgctcgccggaaaaacaacaacc |
376 |
Q |
| |
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|||||| ||| ||||||||| ||| |||||||||||||| || |||||| ||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
40326423 |
aattcatatcgagaatcatgtgagctttcatcatcggtg------tcggcatctactccgtcagcgacgacggttcccactcgtcggaaaaacaacaaca |
40326516 |
T |
|
| Q |
377 |
gcgttagtgatcaacggagatgccgtcaaatagatcggggagcatcaccggtggataatttcgaaacactagaccgatcggaatttgtaaactcgtcgga |
476 |
Q |
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||||||||||||||| ||||||| ||||| ||||||| ||||||||||| ||||||||||||||||| |||| |||| |||||||||| ||||||||| |
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| T |
40326517 |
gcgttagtgatcaacagagatgctgtcaattagatcgaggagcatcaccaatggataatttcgaaacaatagattgatcagaatttgtaacctcgtcgga |
40326616 |
T |
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| Q |
477 |
atcttcaccgcggagtcggaacaagacgac--ggtgatgacgacggcgcggcggtcgaagctaggttac |
543 |
Q |
| |
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||||| ||| |||||||||||||||||||| || |||||||||| ||||||||||| |||||||||| |
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| T |
40326617 |
atctttacctcggagtcggaacaagacgacggggcgatgacgacgatgcggcggtcgaggctaggttac |
40326685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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