View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3727R-Insertion-6 (Length: 287)
Name: NF3727R-Insertion-6
Description: NF3727R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3727R-Insertion-6 |
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| [»] chr8 (6 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 69 - 287
Target Start/End: Complemental strand, 15338702 - 15338484
Alignment:
| Q |
69 |
ccaccttatcgtgaggcttcagttgatgttcatggatatggttttgactatattaaagatgactttaagattattaggtatatacaatttactccaataa |
168 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15338702 |
ccaccttatcgtgaggcttcagttgatgttcatggatttggttatgactatattaaagatgactttaagattattaggtatatacaatttactccaataa |
15338603 |
T |
|
| Q |
169 |
gtagtgggcgtcttaaacgtctcaatgtgcaacatgaagatgtgtcatggaatgaaatatcctatgaacctgagtgggagatttacagcctaaggtgcaa |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15338602 |
gtagtgggcgtcttaaacgtctcaatgtgcaacatgaagatgtgtcatggaatgaaatatcctatgaacctgagtgggagatttacagcctaaggtgcaa |
15338503 |
T |
|
| Q |
269 |
ctcttggaagaaacatgat |
287 |
Q |
| |
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||||||||||||||||||| |
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| T |
15338502 |
ctcttggaagaaacatgat |
15338484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 69 - 287
Target Start/End: Complemental strand, 15427767 - 15427549
Alignment:
| Q |
69 |
ccaccttatcgtgaggcttcagttgatgttcatggatatggttttgactatattaaagatgactttaagattattaggtatatacaatttactccaataa |
168 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15427767 |
ccaccttatcgtgaggcttcagttgatgttcatggatttggttatgactatattaaagatgactttaagattattaggtatatacaatttactccaataa |
15427668 |
T |
|
| Q |
169 |
gtagtgggcgtcttaaacgtctcaatgtgcaacatgaagatgtgtcatggaatgaaatatcctatgaacctgagtgggagatttacagcctaaggtgcaa |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15427667 |
gtagtgggcgtcttaaacgtctcaatgtgcaacatgaagatgtgtcatggaatgaaatatcctatgaacctgagtgggagatttacagcctaaggtgcaa |
15427568 |
T |
|
| Q |
269 |
ctcttggaagaaacatgat |
287 |
Q |
| |
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||||||||||||||||||| |
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| T |
15427567 |
ctcttggaagaaacatgat |
15427549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 69 - 287
Target Start/End: Complemental strand, 15519071 - 15518853
Alignment:
| Q |
69 |
ccaccttatcgtgaggcttcagttgatgttcatggatatggttttgactatattaaagatgactttaagattattaggtatatacaatttactccaataa |
168 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15519071 |
ccaccttatcgtgaggcttcagttgatgttcatggatttggttatgactatattaaagatgactttaagattattaggtatatacaatttactccaataa |
15518972 |
T |
|
| Q |
169 |
gtagtgggcgtcttaaacgtctcaatgtgcaacatgaagatgtgtcatggaatgaaatatcctatgaacctgagtgggagatttacagcctaaggtgcaa |
268 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15518971 |
gtagtgggcgtcttaaacgtctcaatgtgcaacatgaagatgtgtcatggaatgaaatatcctatgaacctgagtgggagatttacagcctaaggtgcaa |
15518872 |
T |
|
| Q |
269 |
ctcttggaagaaacatgat |
287 |
Q |
| |
|
||||||||||||||||||| |
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| T |
15518871 |
ctcttggaagaaacatgat |
15518853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 15338744 - 15338684
Alignment:
| Q |
7 |
catgaattcaaggtcattccactcagtcccattgagtttgtcccaccttatcgtgaggctt |
67 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15338744 |
catgaattcaaggtcattccactcagtcccattgagtttgtcccaccttatcgtgaggctt |
15338684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 15427809 - 15427749
Alignment:
| Q |
7 |
catgaattcaaggtcattccactcagtcccattgagtttgtcccaccttatcgtgaggctt |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15427809 |
catgaattcaaggtcattccactcagtcccattgagtttgtcccaccttatcgtgaggctt |
15427749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 15519113 - 15519053
Alignment:
| Q |
7 |
catgaattcaaggtcattccactcagtcccattgagtttgtcccaccttatcgtgaggctt |
67 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15519113 |
catgaattcaaggtcattccactcagtcccattgagtttgtcccaccttatcgtgaggctt |
15519053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 66 - 287
Target Start/End: Complemental strand, 44938353 - 44938132
Alignment:
| Q |
66 |
ttaccaccttatcgtgaggcttcagttgatgttcatggatatggttttgactatattaaagatgactttaagattattaggtatatacaatttactccaa |
165 |
Q |
| |
|
|||||||||||||| |||| ||| ||| | ||||||| | ||||| |||| |||||||||| |||||||||||||||||||| |||||||| ||| ||| |
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| T |
44938353 |
ttaccaccttatcgggaggtttcgattggtcttcatgggtttggttatgaccatattaaagaggactttaagattattaggtacatacaattcacttcaa |
44938254 |
T |
|
| Q |
166 |
taagtagtgggcgtcttaaacgtctcaatgtgcaacatgaagatgtgtcatggaatgaaatatcctatgaacctgagtgggagatttacagcctaaggtg |
265 |
Q |
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||||||| || |||||| |||||||| |||||| ||||||||||||| ||||| |||||||| ||| |||| || ||||||||||| ||| ||||||| |
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| T |
44938253 |
taagtagcggtcgtcttgaacgtctccatgtgcgttatgaagatgtgtcgtggaacgaaatatcatatcaacccgaatgggagatttatagcttaaggtg |
44938154 |
T |
|
| Q |
266 |
caactcttggaagaaacatgat |
287 |
Q |
| |
|
|| ||||||||||||| |||| |
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| T |
44938153 |
taattcttggaagaaacttgat |
44938132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 276
Target Start/End: Complemental strand, 44919016 - 44918832
Alignment:
| Q |
92 |
tgatgttcatggatatggttttgactatattaaagatgactttaagattattaggtatatacaatttactccaataagtagtgggcgtcttaaacgtctc |
191 |
Q |
| |
|
|||| ||||||| | ||||| |||||||||| |||||||||||| ||||||||||| || |||||||| |||||||| | ||| |||||||| |
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| T |
44919016 |
tgatattcatgggtttggttatgactatattttagatgactttaaaattattaggtacatgaaatttactacaataagtgaccaacaacttgaacgtctc |
44918917 |
T |
|
| Q |
192 |
aatgtgcaacatgaagatgtgtcatggaatgaaatatcctatgaacctgagtgggagatttacagcctaaggtgcaactcttgga |
276 |
Q |
| |
|
|| ||| ||| || |||| ||||||| |||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||| |
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| T |
44918916 |
gatatgcgacacaaaattgtgccatggaacgaaatatcttatgaacctgaatgggagatttatagcctaaggtgtaactcttgga |
44918832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 276
Target Start/End: Complemental strand, 44913015 - 44912836
Alignment:
| Q |
97 |
ttcatggatatggttttgactatattaaagatgactttaagattattaggtatatacaatttactccaataagtagtgggcgtcttaaacgtctcaatgt |
196 |
Q |
| |
|
||||||| | ||||| |||| |||| |||||||||||||| |||||||| || || | ||||||| |||||||| ||| ||||||| |||| |
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|
| T |
44913015 |
ttcatgggtttggttatgaccatatcaaagatgactttaaaattattagatacatgcgatttactacaataagtgaccaagaacttgaacgtcttgatgt |
44912916 |
T |
|
| Q |
197 |
gcaacatgaagatgtgtcatggaatgaaatatcctatgaacctgagtgggagatttacagcctaaggtgcaactcttgga |
276 |
Q |
| |
|
|| | | ||| |||| ||||||| |||||||| |||||| |||| ||||||||||| ||||||||||| |||||||||| |
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|
| T |
44912915 |
gcgatacgaatatgttccatggaacgaaatatcttatgaatctgaatgggagatttatagcctaaggtgtaactcttgga |
44912836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 67 - 276
Target Start/End: Original strand, 20426136 - 20426345
Alignment:
| Q |
67 |
taccaccttatcgtgaggcttc-agttgatgttcatggatatggttttgactatattaaagatgactttaagattattaggtatatacaatttactccaa |
165 |
Q |
| |
|
||||||||||||| |||||||| | || || ||||||||| ||||| |||| ||||| |||||||| ||||||||||||||||| | || ||| || || |
|
|
| T |
20426136 |
taccaccttatcgagaggcttcgactttat-ttcatggatttggttatgaccatattcaagatgacattaagattattaggtatgtgcatttttgtcgaa |
20426234 |
T |
|
| Q |
166 |
taagtagtgggcgtcttaaacgtctcaatgtgcaacatgaagatgtgtcatggaatgaaatatcctatgaacctgagtgggagatttacagcctaaggtg |
265 |
Q |
| |
|
||| | |||| ||||| ||| ||||||||||| || ||||||||| |||||||||||||||||||||||||| ||||||||||| ||| |||| || |
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|
| T |
20426235 |
taaatggtggaggtcttcaacttctcaatgtgcgacgggaagatgtgccatggaatgaaatatcctatgaacctttatgggagatttatagcgtaagatg |
20426334 |
T |
|
| Q |
266 |
caactcttgga |
276 |
Q |
| |
|
|||||||||| |
|
|
| T |
20426335 |
taactcttgga |
20426345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 287
Target Start/End: Complemental strand, 20455857 - 20455758
Alignment:
| Q |
188 |
tctcaatgtgcaacatgaagatgtgtcatggaatgaaatatcctatgaacctgagtgggagatttacagcctaaggtgcaactcttggaagaaacatgat |
287 |
Q |
| |
|
|||||||||| ||| ||||||||| |||||||| |||||||||||||| || || |||||||| || |||| || |||||||||| || ||||||| |
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|
| T |
20455857 |
tctcaatgtgtgacacgaagatgtgccatggaataaaatatcctatgaaactttatgagagatttatagtgtaagatgtaactcttggaggacacatgat |
20455758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 30651131 - 30651188
Alignment:
| Q |
97 |
ttcatggatatggttttgactatattaaagatgactttaagattattaggtatataca |
154 |
Q |
| |
|
||||||||| ||||| |||| || ||| |||||||| |||||||||||||| |||||| |
|
|
| T |
30651131 |
ttcatggatttggttatgaccatgttagagatgactataagattattaggtgtataca |
30651188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 31777477 - 31777534
Alignment:
| Q |
97 |
ttcatggatatggttttgactatattaaagatgactttaagattattaggtatataca |
154 |
Q |
| |
|
||||||||| ||||| |||| || ||| |||||||| |||||||||||||| |||||| |
|
|
| T |
31777477 |
ttcatggatttggttatgaccatgttagagatgactataagattattaggtgtataca |
31777534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 258
Target Start/End: Original strand, 51869657 - 51869710
Alignment:
| Q |
205 |
aagatgtgtcatggaatgaaatatcctatgaacctgagtgggagatttacagcc |
258 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
51869657 |
aagatgtgtcacgtaatgaaatatcctatgaacctttatgggagatttatagcc |
51869710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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