View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3727_high_5 (Length: 424)
Name: NF3727_high_5
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3727_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 32095886 - 32095467
Alignment:
| Q |
1 |
ggtcgtatcttggccattgtatcaagcctgtattagttaaagagctaatatatttatagaattacggtgttggatcaccatgtgccccatctcatggatt |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32095886 |
ggtcgtatcttggtcattgtatcaagcctgtattagttaaagagctaatatatttatagaattacggtgttggatcaccatgtgccccatctcatggatt |
32095787 |
T |
|
| Q |
101 |
tgaatttttgtttactgaaatgaaatggttaacttgtgcagactcagatggaaccggtaattcaggactgcagagagatggtgcaccaatttggagatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32095786 |
tgaatttttgtttactgaaatgaaatggttaacttgtgcagactcagatggaaccggtaattcaggactgcagagagatggtgcaccaatttggagatgt |
32095687 |
T |
|
| Q |
201 |
aattagaaggtaattcataaagtgaaagacgaagactcttatgaatgtgtaagattttgttttagtgaatatttaatcttgtaacttgcttaaaaattga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32095686 |
aattagaaggtaattcataaagtgaaagacgaagactcttatgaatgtgtaagattttgttttagtgaatatttaatcttgtaacttgcttaaaaattga |
32095587 |
T |
|
| Q |
301 |
gtggagcactaagcattgagtaagacacaagttgtgagcgaatcagtatgaaaaataggcaaagggactctccagctttagtataaatagaggatcacac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32095586 |
gtggagcactaagcattgagtaagacacaagttgtgagcgaatcagtatgaaaaataggcaaagggactctccagctttagtataaatagaggatcacac |
32095487 |
T |
|
| Q |
401 |
tcttgtatcctttgcttctc |
420 |
Q |
| |
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|||||||||||||| ||||| |
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| T |
32095486 |
tcttgtatcctttggttctc |
32095467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 191 - 411
Target Start/End: Complemental strand, 32089795 - 32089576
Alignment:
| Q |
191 |
ttggagatgtaattagaaggtaattcataaagtgaaagacgaagactcttatgaatgtgtaagattttgttttagtgaatatttaatcttgtaacttgct |
290 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
32089795 |
ttggagatgtaattagaaggtaattcatat-gtgaaagatgaagactcttatggatgcgtaagattttgttttagtggatatttaatcttttaacttgct |
32089697 |
T |
|
| Q |
291 |
taaaaattgagtggagcactaagcattgagtaagacacaagttgtgagcgaatcagtatgaaaaataggcaaagggactctccagctttagtataaatag |
390 |
Q |
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|||||||| | || |||||||||||| ||||||||||||| ||||||| |||||| ||||||||||||| |||||||| ||||||||||||| ||||||| |
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| T |
32089696 |
taaaaattaactgcagcactaagcatcgagtaagacacaaattgtgagtgaatcattatgaaaaatagggaaagggacactccagctttagtttaaatag |
32089597 |
T |
|
| Q |
391 |
aggatcacactcttgtatcct |
411 |
Q |
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| T |
32089596 |
aggatcacactcttgtatcct |
32089576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 32091717 - 32091611
Alignment:
| Q |
51 |
tatttatagaattacggtgttggatcaccatgtg-------ccccatctcatggatttgaatttttgtttactgaaatgaaatggttaacttgtgcagac |
143 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
32091717 |
tatttatagaattacggtgttggatcaccatgtggcatgtgccctatctcatggatttgaatttttgtttactgaaatgaaatggttaacctgtgtagac |
32091618 |
T |
|
| Q |
144 |
tcagatg |
150 |
Q |
| |
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||||||| |
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|
| T |
32091617 |
tcagatg |
32091611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 32091801 - 32091741
Alignment:
| Q |
1 |
ggtcgtatcttggccattgtatcaagcctgtattagttaaagagctaatatatttatagaa |
61 |
Q |
| |
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||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
32091801 |
ggtcgtatcttggtcaatgtatcaagcctgtatttgttaaagagctaatataattatagaa |
32091741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 29427907 - 29427872
Alignment:
| Q |
45 |
ctaatatatttatagaattacggtgttggatcacca |
80 |
Q |
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|||||||||| ||||||||||||||||||||||||| |
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|
| T |
29427907 |
ctaatatattaatagaattacggtgttggatcacca |
29427872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 41746719 - 41746796
Alignment:
| Q |
56 |
atagaattacggtgttggatcaccatgtgccccatctcatggatttgaatttttgtttactgaaatgaaatggttaac |
133 |
Q |
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|||||||||| |||| |||||||||||||| |||| ||| | ||||||| |||||| ||||||||||||||| ||||| |
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| T |
41746719 |
atagaattacagtgtcggatcaccatgtgctccatttcacgtatttgaacttttgtatactgaaatgaaatgtttaac |
41746796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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