View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3727_high_6 (Length: 397)

Name: NF3727_high_6
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3727_high_6
NF3727_high_6
[»] chr8 (6 HSPs)
chr8 (182-387)||(13844813-13845018)
chr8 (1-109)||(13844632-13844740)
chr8 (1-32)||(31236613-31236644)
chr8 (1-35)||(27213536-27213570)
chr8 (1-38)||(34897071-34897108)
chr8 (1-38)||(39954315-39954352)
[»] chr1 (8 HSPs)
chr1 (1-43)||(3490426-3490468)
chr1 (1-37)||(19562657-19562693)
chr1 (1-40)||(17831567-17831606)
chr1 (1-44)||(21530669-21530712)
chr1 (5-43)||(38076010-38076048)
chr1 (1-38)||(2896157-2896194)
chr1 (1-38)||(36878447-36878484)
chr1 (1-37)||(1262871-1262907)
[»] chr6 (5 HSPs)
chr6 (1-43)||(3209362-3209404)
chr6 (1-38)||(677823-677860)
chr6 (1-38)||(7996414-7996451)
chr6 (1-38)||(8022350-8022387)
chr6 (1-37)||(26562676-26562712)
[»] chr7 (3 HSPs)
chr7 (1-42)||(5475754-5475795)
chr7 (1-43)||(45056937-45056979)
chr7 (1-38)||(32308106-32308143)
[»] chr3 (6 HSPs)
chr3 (1-58)||(40052298-40052355)
chr3 (1-43)||(14747542-14747584)
chr3 (1-43)||(21479099-21479141)
chr3 (1-58)||(1438770-1438827)
chr3 (1-38)||(8039192-8039229)
chr3 (3-58)||(37077323-37077379)
[»] chr2 (8 HSPs)
chr2 (1-37)||(21782854-21782890)
chr2 (1-31)||(31284041-31284071)
chr2 (1-43)||(38117195-38117237)
chr2 (1-38)||(21616748-21616785)
chr2 (6-43)||(26769492-26769529)
chr2 (1-38)||(27084248-27084285)
chr2 (1-37)||(896198-896234)
chr2 (6-38)||(22550283-22550315)
[»] scaffold0697 (1 HSPs)
scaffold0697 (1-44)||(1624-1667)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-43)||(71704-71746)
[»] chr5 (6 HSPs)
chr5 (1-58)||(14674234-14674292)
chr5 (1-43)||(31084304-31084346)
chr5 (2-58)||(6035448-6035505)
chr5 (2-43)||(11685920-11685961)
chr5 (1-38)||(39205866-39205903)
chr5 (7-43)||(2436903-2436939)
[»] chr4 (5 HSPs)
chr4 (1-43)||(15835675-15835717)
chr4 (1-43)||(35723421-35723463)
chr4 (6-43)||(15029746-15029783)
chr4 (1-38)||(17345451-17345488)
chr4 (6-42)||(50280863-50280899)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-38)||(92793-92830)


Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 182 - 387
Target Start/End: Original strand, 13844813 - 13845018
Alignment:
Q  182 tttggttcaaaggaaaaagccgtgaaaggatgccagggaaaccagaaactgatgattggagaataaagcaaagtgagcaggttcagttgccatcttccat 281  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  13844813 tttggttcaaaggaaaaagctgtgaaaggatgccagggaaaccagaaactgatgattggagaatagagcatagtgagcaggttcagttgccatcttccat 13844912  T
Q  282 ttactctcatcatcagccttggtggcttgaaaatggctccaaaccatcttcagctgatcagctaaatggttcaatcatgaatgatgtcacacattcagag 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13844913 ttactctcatcatcagccttggtggcttgaaaatggctccaaaccatcttcagctgatcagctaaatggttcaatcatgaatgatgtcacacattcagag 13845012  T
Q  382 cctttg 387  Q
    ||||||    
T  13845013 cctttg 13845018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 13844632 - 13844740
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtctttattcgtgcttcacagagctcaagtgtttttgagcttatctgagtaagggtaaat 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13844632 ttttctcaaattattagcagtgtcggcgtgtccgtgtcgtgtctgtattcgtgcttcacagagctcaagtgtttttgagcttatctgagtaagggtaaat 13844731  T
Q  101 gttcaaaca 109  Q
    |||||||||    
T  13844732 gttcaaaca 13844740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 31236613 - 31236644
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtc 32  Q
    ||||||||||||||||||||||||||||||||    
T  31236613 ttttctcaaattattagcagtgtcggcgtgtc 31236644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 27213570 - 27213536
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgt 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  27213570 ttttctgaaattattagcagtgtcggcgtgtctgt 27213536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34897108 - 34897071
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  34897108 ttttctcaaattattagcggtgtcgacgtgtctgtgtc 34897071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 39954315 - 39954352
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  39954315 ttttctcaaattattagcggtgtcggcgtgtcggtgtc 39954352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3490426 - 3490468
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  3490426 ttttctcaaattattagcagtgtcggcgtgtcagtgtcgtgtc 3490468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19562657 - 19562693
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgt 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  19562657 ttttctcaaattattagcagtgtcggcgtgtcagtgt 19562693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 17831567 - 17831606
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgt 40  Q
    |||||||||||||||||| ||||||||||||| |||||||    
T  17831567 ttttctcaaattattagcggtgtcggcgtgtcagtgtcgt 17831606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 21530712 - 21530669
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtct 44  Q
    |||||||||||||||| | ||||||||||||||||||| |||||    
T  21530712 ttttctcaaattattaacggtgtcggcgtgtctgtgtcatgtct 21530669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 38076010 - 38076048
Alignment:
Q  5 ctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  38076010 ctcaaattattagcagtgtcgtcgtgtccgtgtcgtgtc 38076048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2896157 - 2896194
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  2896157 ttttctcaaattattagcggtgtcggcgtgtcagtgtc 2896194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36878484 - 36878447
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  36878484 ttttctcaaattattagcggtgtcggcgtgtcagtgtc 36878447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1262907 - 1262871
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgt 37  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  1262907 ttttctcaaattattagctgtgtcggcgtgtccgtgt 1262871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 3209404 - 3209362
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    |||| ||||||||||||| ||||||||||||||||||||||||    
T  3209404 ttttttcaaattattagctgtgtcggcgtgtctgtgtcgtgtc 3209362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 677860 - 677823
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  677860 ttttctcaaattattaacagtgtcggcgtgtcagtgtc 677823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7996414 - 7996451
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  7996414 ttttctcaaattattagcagtgtcggcatgtcagtgtc 7996451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8022387 - 8022350
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  8022387 ttttctcaaattattagcagtgtcggcatgtcagtgtc 8022350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26562712 - 26562676
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgt 37  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  26562712 ttttctcaaatttttagcagtgtcggcgtgtccgtgt 26562676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5475754 - 5475795
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgt 42  Q
    |||||||||||||||||||| |||||||| ||||||||||||    
T  5475754 ttttctcaaattattagcagcgtcggcgtatctgtgtcgtgt 5475795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 45056937 - 45056979
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    ||||||||||||||||||||||| || ||||| ||||||||||    
T  45056937 ttttctcaaattattagcagtgttggagtgtccgtgtcgtgtc 45056979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32308143 - 32308106
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  32308143 ttttctcaaattattagcggtgtcggcgtgtcagtgtc 32308106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 40052355 - 40052298
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtctttattcgtgcttca 58  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||  ||| |||||||||    
T  40052355 ttttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtccgtatccgtgcttca 40052298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 14747584 - 14747542
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||    
T  14747584 ttttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtc 14747542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 21479141 - 21479099
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||    
T  21479141 ttttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtc 21479099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 1438827 - 1438770
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtctttattcgtgcttca 58  Q
    |||||||||||| |||||  |||||| ||||| ||||||||||  |||||||||||||    
T  1438827 ttttctcaaattgttagcgatgtcggtgtgtcagtgtcgtgtccatattcgtgcttca 1438770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8039229 - 8039192
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    |||||||||||||| | |||||||||||||||||||||    
T  8039229 ttttctcaaattatcatcagtgtcggcgtgtctgtgtc 8039192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 37077379 - 37077323
Alignment:
Q  3 ttctcaaattattagcagtgtcggcgtgtctgtgt-cgtgtctttattcgtgcttca 58  Q
    |||||||||||||| | |||||||||||||  ||| ||||||||||| |||||||||    
T  37077379 ttctcaaattattatcggtgtcggcgtgtcactgtccgtgtctttatccgtgcttca 37077323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21782854 - 21782890
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgt 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  21782854 ttttctcaaattattagcagtgtcggcgtgtcagtgt 21782890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 31284071 - 31284041
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  31284071 ttttctcaaattattagcagtgtcggcgtgt 31284041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 38117195 - 38117237
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||    
T  38117195 ttttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtc 38117237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21616785 - 21616748
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  21616785 ttttctcaaattattagcggtgtcggcgtgtccgtgtc 21616748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 26769529 - 26769492
Alignment:
Q  6 tcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  26769529 tcaaattattagttgtgtcggcgtgtctgtgtcgtgtc 26769492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27084285 - 27084248
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  27084285 ttttctcaaattattagcagtgtcggagtgtccgtgtc 27084248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 896234 - 896198
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgt 37  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  896234 ttttctcaaactattagcagtgtcggcgtgtcagtgt 896198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 22550283 - 22550315
Alignment:
Q  6 tcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    ||||||||||||||||||||||||||| |||||    
T  22550283 tcaaattattagcagtgtcggcgtgtccgtgtc 22550315  T

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Target: scaffold0697 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 1667 - 1624
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtct 44  Q
    |||||||||||||||| | ||||||||||||||||||| |||||    
T  1667 ttttctcaaattattaacggtgtcggcgtgtctgtgtcatgtct 1624  T

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Target: scaffold0019 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 71746 - 71704
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||    
T  71746 ttttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtc 71704  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 14674292 - 14674234
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgt-cgtgtctttattcgtgcttca 58  Q
    |||| ||||||||||||| ||||||||||||| |||| ||||||| ||| |||||||||    
T  14674292 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtctgtatccgtgcttca 14674234  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31084346 - 31084304
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||    
T  31084346 ttttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtc 31084304  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 6035505 - 6035448
Alignment:
Q  2 tttctcaaattattagcagtgtcggcgtgtctgtgtc-gtgtctttattcgtgcttca 58  Q
    ||||||||||||||||| ||||||||||||| |||||  ||||| ||| |||||||||    
T  6035505 tttctcaaattattagcggtgtcggcgtgtcagtgtctttgtctatatccgtgcttca 6035448  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 11685961 - 11685920
Alignment:
Q  2 tttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    ||||||||||||||||| |||||||| |||| ||||||||||    
T  11685961 tttctcaaattattagcggtgtcggcatgtcagtgtcgtgtc 11685920  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39205903 - 39205866
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  39205903 ttttctcaaattattagcagtgtcgacgtgtccgtgtc 39205866  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 2436939 - 2436903
Alignment:
Q  7 caaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  2436939 caaattattagcggtgtcggcgtgtcagtgtcgtgtc 2436903  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 15835675 - 15835717
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    |||| ||||||||||| ||||||||| ||||||||||||||||    
T  15835675 ttttttcaaattattaacagtgtcggtgtgtctgtgtcgtgtc 15835717  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 35723421 - 35723463
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    |||||||||||||||||| ||||||||||||| ||||| ||||    
T  35723421 ttttctcaaattattagcggtgtcggcgtgtcagtgtcatgtc 35723463  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 15029783 - 15029746
Alignment:
Q  6 tcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  15029783 tcaaattattagcagtgtctgcgtgtcagtgtcgtgtc 15029746  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17345451 - 17345488
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  17345451 ttttctcaaattattagcggtgtcggcgtgtcagtgtc 17345488  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 50280899 - 50280863
Alignment:
Q  6 tcaaattattagcagtgtcggcgtgtctgtgtcgtgt 42  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  50280899 tcaaattattagctgtgtcggcgtgtccgtgtcgtgt 50280863  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 92830 - 92793
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  92830 ttttctcaaattattagcggtgtcggcgtgtcagtgtc 92793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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