View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3727_high_7 (Length: 344)

Name: NF3727_high_7
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3727_high_7
NF3727_high_7
[»] scaffold0041 (2 HSPs)
scaffold0041 (154-342)||(77716-77904)
scaffold0041 (10-92)||(77966-78048)
[»] chr7 (2 HSPs)
chr7 (154-342)||(40888380-40888568)
chr7 (10-92)||(40888236-40888318)
[»] chr3 (2 HSPs)
chr3 (6-92)||(14904952-14905038)
chr3 (154-332)||(14904713-14904893)
[»] chr1 (1 HSPs)
chr1 (255-341)||(28270718-28270804)
[»] chr4 (1 HSPs)
chr4 (257-317)||(21626669-21626729)


Alignment Details
Target: scaffold0041 (Bit Score: 181; Significance: 9e-98; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 154 - 342
Target Start/End: Complemental strand, 77904 - 77716
Alignment:
Q  154 tgtcggtgaaacaattgttttttcaaatgaatcaaacaatgagatatggtaatttcttcacgctaaaactagaaattaacacacaaattgcatgctaatt 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  77904 tgtcggtgaaacaattgttttttcaaatgaatcaaacaatgagatatggtaatttcttcacgctaaaactagaaattaacacacaaattgcatgctaatt 77805  T
Q  254 gctaacctggtaaggcaataaaagcatctgaatgtttggccatctcagctttcctttgatgcatatcagcaacagcctttgcttctcct 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  77804 gctaacctggtaaggcaataaaagcatctgaatgtttggccatctcagctttcctttgatgcatatcagcaacagccttaacttctcct 77716  T

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Target: scaffold0041; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 78048 - 77966
Alignment:
Q  10 ataaaaaggtttagcaaagaaataaaccccacaaaacacaacaatacttggattagtctagaaagttaaacaactttactaga 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  78048 ataaaaaggtttagcaaagaaataaaccccacaaaacacaacaatacttggattagtctagaaagttaaacaactttactaga 77966  T

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Target: chr7 (Bit Score: 181; Significance: 9e-98; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 154 - 342
Target Start/End: Original strand, 40888380 - 40888568
Alignment:
Q  154 tgtcggtgaaacaattgttttttcaaatgaatcaaacaatgagatatggtaatttcttcacgctaaaactagaaattaacacacaaattgcatgctaatt 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40888380 tgtcggtgaaacaattgttttttcaaatgaatcaaacaatgagatatggtaatttcttcacgctaaaactagaaattaacacacaaattgcatgctaatt 40888479  T
Q  254 gctaacctggtaaggcaataaaagcatctgaatgtttggccatctcagctttcctttgatgcatatcagcaacagcctttgcttctcct 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  40888480 gctaacctggtaaggcaataaaagcatctgaatgtttggccatctcagctttcctttgatgcatatcagcaacagccttaacttctcct 40888568  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 40888236 - 40888318
Alignment:
Q  10 ataaaaaggtttagcaaagaaataaaccccacaaaacacaacaatacttggattagtctagaaagttaaacaactttactaga 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40888236 ataaaaaggtttagcaaagaaataaaccccacaaaacacaacaatacttggattagtctagaaagttaaacaactttactaga 40888318  T

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Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 14905038 - 14904952
Alignment:
Q  6 aaagataaaaaggtttagcaaagaaataaaccccacaaaacacaacaatacttggattagtctagaaagttaaacaactttactaga 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  14905038 aaagataaaaaggtttagcaaagaaataaaccccacaaaacacaacaacatttggattagtctagaaagttaaacaactttactaga 14904952  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 154 - 332
Target Start/End: Complemental strand, 14904893 - 14904713
Alignment:
Q  154 tgtcggtgaaacaattgttttttcaaatgaatcaaacaatgagatatggtaatttcttcacgcta--------aaa--ctagaaattaacacacaaattg 243  Q
    |||||||||||||||| ||||| |||| |||||||||||||| ||||||||||||||||||||||        |||  ||||||||||| ||||||||||    
T  14904893 tgtcggtgaaacaattattttt-caaaggaatcaaacaatgaaatatggtaatttcttcacgctatgactataaaatgctagaaattaatacacaaattg 14904795  T
Q  244 catgctaattgctaacctggtaaggcaataaaagcatctgaatgtttggccatctcagctttcctttgatgcatatcagcaacagcctt 332  Q
    ||||||||       ||||||||||||||||||||||| |||||  | ||| ||||||| ||||||| |||||||||||||||| ||||    
T  14904794 catgctaa-------cctggtaaggcaataaaagcatcggaatgcctagccgtctcagcattccttttatgcatatcagcaacaacctt 14904713  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 255 - 341
Target Start/End: Original strand, 28270718 - 28270804
Alignment:
Q  255 ctaacctggtaaggcaataaaagcatctgaatgtttggccatctcagctttcctttgatgcatatcagcaacagcctttgcttctcc 341  Q
    ||||||||||||||||||||||||||||||||| || |||||||| || ||||||||||||||||| || ||||| ||| |||||||    
T  28270718 ctaacctggtaaggcaataaaagcatctgaatgcttagccatctctgccttcctttgatgcatatctgctacagcttttacttctcc 28270804  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 257 - 317
Target Start/End: Complemental strand, 21626729 - 21626669
Alignment:
Q  257 aacctggtaaggcaataaaagcatctgaatgtttggccatctcagctttcctttgatgcat 317  Q
    ||||||||||||||||||||||||| ||||| || |||||||||||||| |||||||||||    
T  21626729 aacctggtaaggcaataaaagcatcagaatgcttagccatctcagcttttctttgatgcat 21626669  T

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