View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3727_low_1 (Length: 599)
Name: NF3727_low_1
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3727_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 148 - 581
Target Start/End: Complemental strand, 25438786 - 25438362
Alignment:
| Q |
148 |
agcagttggtaaagccgcactgtttgaccggaatttcgtaacactaccgcaactactaagccacaacaaaatggatttttcatagggcctccgtttttga |
247 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25438786 |
agcagttggtaaagccgcactatttggccggaatttcctaacactaccgccactactaagccacaacaaaatggatttttcatagggcctccgttattga |
25438687 |
T |
|
| Q |
248 |
ctgcacggagtataacaagtaattgaaaccttgaaaaaccaaactcattaggaaagaccaagtttccaacagttatgtttacacgttaatttaaaaccaa |
347 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
25438686 |
ctgcacggtgtataacaagtaattgataccttgaaaaaccaaactcattaggaaagaccaagtttccaacagttatgtttacaggtcaatttaaaaccaa |
25438587 |
T |
|
| Q |
348 |
gacatcagatatagttatggtgagaatcgttgcacgaaaaagaggtccgtagggatcaactaaaatttgagggatactttgcagcatcgtactgctgctc |
447 |
Q |
| |
|
| || |||||||||||||||||||| ||||||||||||||||||| ||||| | ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
25438586 |
ggca---------gttatggtgagaatcgttgcgcgaaaaagaggtccgtaggaatcaattgaaatttgagggatactttgcagcattgtactgctgctc |
25438496 |
T |
|
| Q |
448 |
ttcttaacattggcgttgatgaaaaagaaattgggatnnnnnnngacaacactgaaccagaacttgagatcattatgttcctttctgtcatcgttgttga |
547 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25438495 |
ttcttaacattggcgttgatgaaaaagaaattgggataaaaaaagacaacactgaaccagaacttgagatcattatgttcctttctgtcatcgttgttga |
25438396 |
T |
|
| Q |
548 |
tctaggatgccatgacgcggttcaaccactgtac |
581 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
25438395 |
tctaggatgccatgacgcggttcaatcactgtac |
25438362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 25438896 - 25438820
Alignment:
| Q |
1 |
gcttctgaggagaagaaataaaaagaaagaatggtcctatttcattgccattcaagatttaagggtgaaataaccat |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25438896 |
gcttctgaggagaagaaataaaaagaaagaatgggcctatttcattgccattcaagatttaagggtgaaataaccat |
25438820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University