View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3727_low_10 (Length: 275)
Name: NF3727_low_10
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3727_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 45333959 - 45333707
Alignment:
| Q |
14 |
tagcaaatggacatgtccgaatgatgttgtttcttggaactcaactctacgagaatactacaaaactacatgtcctttttgtgaagtttcttgtgctatt |
113 |
Q |
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| T |
45333959 |
tagcaaatggacatgtccgaatgatgttgtttcttggaactcaactctacgagaatactacaaaactacatgtcctttttgtgaagtttcttgtgctatt |
45333860 |
T |
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| Q |
114 |
tagttgatacatgaatgaaacataatcaacctggttttgttttcctagtatatgaaccttaaattttgctctaactcagggagctagaaatcaagctaat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45333859 |
tagttgatacatgaatgaaacataatcaacctggttttgttttcctagtatatgaaccttaaattttgctctaactcagggagctagaaatcaagcttat |
45333760 |
T |
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| Q |
214 |
aatatgttcctcattggatgataaaatacctcactattgactgtctgtgttgc |
266 |
Q |
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| T |
45333759 |
aatatgttcctcattggatgataaaatacctcactattgactgtgtgtattgc |
45333707 |
T |
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Back To:
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Target: chr7 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 72 - 266
Target Start/End: Original strand, 11271316 - 11271509
Alignment:
| Q |
72 |
tacaaaactacatgtcctttttgtgaagtttcttgtgctatttagttgatacatgaatgaaacataatcaacctggttttgttttcctagtatatgaacc |
171 |
Q |
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||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||| |
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| T |
11271316 |
tacaaaactacgtgtcctttttgtgaagtttcttgcgctatttagttgatacatgaatgaaacgtaatcaacctggttttattttcctc-tatatgaacc |
11271414 |
T |
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| Q |
172 |
ttaaattttgctctaactcagggagctagaaatcaagctaataatatgttcctcattggatgataaaatacctcactattgactgtctgtgttgc |
266 |
Q |
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|||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||| ||| |||| |
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| T |
11271415 |
ttaatttttgatctaactcagggagctagaaatcaagcttatgatatgttcctcattggatgataaaatacctcacttttgactgtgtgtattgc |
11271509 |
T |
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