View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3727_low_11 (Length: 268)
Name: NF3727_low_11
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3727_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 80 - 246
Target Start/End: Complemental strand, 276344 - 276178
Alignment:
| Q |
80 |
ttgaaaaccattacatatcaattccttactaccatacaatctagtggtaatgtgaaccatgcattcatataagagacaaagaggacctaatttccttcat |
179 |
Q |
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| T |
276344 |
ttgaaaaccattacatatcaattccttactaccatacaatctagtggtaatgtgaaccatgcattcatataagagacaaagaggacctaatttccttcat |
276245 |
T |
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| Q |
180 |
aaaaaccaacttcaagacaaatttttgatatcatatatggcttccaaagcattggattgttttccag |
246 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
276244 |
aaaaaccaacttcaagacaagtttttgatatcatatatggcttccaaagcattggattgttttccag |
276178 |
T |
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