View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3727_low_13 (Length: 249)
Name: NF3727_low_13
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3727_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 7129488 - 7129255
Alignment:
| Q |
1 |
aacaaccatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7129488 |
aacaaccatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgac |
7129389 |
T |
|
| Q |
101 |
aagtgatgaccaatcacaagaaggctaaaaaggttcgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaagga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7129388 |
aagtgatgaccaatcacaagaaggctaaaaaggttcgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaagga |
7129289 |
T |
|
| Q |
201 |
acttagtaagagaattaaggaccttaatgttgat |
234 |
Q |
| |
|
|||||||||||||||| ||| ||||||| ||||| |
|
|
| T |
7129288 |
acttagtaagagaattgaggcccttaattttgat |
7129255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 7494052 - 7494283
Alignment:
| Q |
1 |
aacaaccatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgac |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
7494052 |
aacaaccatcaagttcaactgtggttggaaaagctgaaagatgctcttgatgatgccgatgacttgctcgatgactttaacacggaagacttgaggcgac |
7494151 |
T |
|
| Q |
101 |
aagtgatgaccaatcacaagaaggctaaaaaggttcgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaagga |
200 |
Q |
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| |||||||||| | ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7494152 |
aggtgatgaccagtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaagga |
7494251 |
T |
|
| Q |
201 |
acttagtaagagaattaaggaccttaatgttg |
232 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| |
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|
| T |
7494252 |
acttagtaagagaattgaggcccttaatgttg |
7494283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 7481650 - 7481881
Alignment:
| Q |
1 |
aacaaccatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgac |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
7481650 |
aacaaccatcaagttcaactctggctggaaaagctcaaagatgctcttgatgatgccgatgacttgctcgatgactttaacactgaagacttgaggcgac |
7481749 |
T |
|
| Q |
101 |
aagtgatgaccaatcacaagaaggctaaaaaggttcgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaagga |
200 |
Q |
| |
|
|||| ||||||| | ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7481750 |
aagtcatgaccagtaacaagaaggctaaaaagttttacatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaagga |
7481849 |
T |
|
| Q |
201 |
acttagtaagagaattaaggaccttaatgttg |
232 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| |
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|
| T |
7481850 |
acttagtaagagaattgaggctcttaatgttg |
7481881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 7519719 - 7519950
Alignment:
| Q |
1 |
aacaaccatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgac |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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|
| T |
7519719 |
aacaaccatcaagttcaactgtggttggaaaagctgaaagatgctcttgatgatgccgataacttgcttgatgacttcaacaccgaagacttgaggcgac |
7519818 |
T |
|
| Q |
101 |
aagtgatgaccaatcacaagaaggctaaaaaggttcgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaagga |
200 |
Q |
| |
|
||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
7519819 |
aagtgatgacctgtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagataattaagga |
7519918 |
T |
|
| Q |
201 |
acttagtaagagaattaaggaccttaatgttg |
232 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| |
|
|
| T |
7519919 |
acttagtaagagaattgaggcccttaatgttg |
7519950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 7722762 - 7722529
Alignment:
| Q |
1 |
aacaaccatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgac |
100 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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|
| T |
7722762 |
aacaaccatcaagttcaactctggcttgaaaatctcaaagatgctcttgatgatgccgatgacgtgcttgatgactttaacactgaagacttgaggcgac |
7722663 |
T |
|
| Q |
101 |
aagtgatgaccaatcacaagaaggctaaaaaggttcgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaagga |
200 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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|
| T |
7722662 |
aagtgatgaccagtaacaagaaggctaaaaagttttgcatcttcttctcatcatccaaccaacttctcttttcatacaaaatggttcagaaaattaagga |
7722563 |
T |
|
| Q |
201 |
acttagtaagagaattaaggaccttaatgttgat |
234 |
Q |
| |
|
|||||||||||||||| ||| ||||||| ||||| |
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|
| T |
7722562 |
acttagtaagagaattgaggcccttaatattgat |
7722529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 7527769 - 7528002
Alignment:
| Q |
1 |
aacaaccatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgac |
100 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| ||||| |||||| ||||||||||||||||||| || ||| |||| ||||| ||||| ||||||||| |
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|
| T |
7527769 |
aacaaccatcaagttcaactatggctggaaaatctcaaagatgcttttgatgatgccgatgactttctcgattacttcaacacggaagaactgaggcgac |
7527868 |
T |
|
| Q |
101 |
aagtgatgaccaatcacaagaaggctaaaaaggttcgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaagga |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7527869 |
aagtgatgaccaatcacaagaaagctaaaaaggtccgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaagga |
7527968 |
T |
|
| Q |
201 |
acttagtaagagaattaaggaccttaatgttgat |
234 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||| |
|
|
| T |
7527969 |
acttagtaagagaattgaggcccttaatgttgat |
7528002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 40 - 232
Target Start/End: Original strand, 7506355 - 7506547
Alignment:
| Q |
40 |
gatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgacaagtgatgaccaatcacaagaaggctaaaaaggttcgca |
139 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||| || |
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|
| T |
7506355 |
gatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaacaagaaggctaaaaagtttcaca |
7506454 |
T |
|
| Q |
140 |
tcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaacttagtaagagaattaaggaccttaatgttg |
232 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| |
|
|
| T |
7506455 |
tcttcttctcatcatccaaccaacttctcttttcttacaaaatggttcagaaaattaatgaacttagtaagagaattgaggcccttaatgttg |
7506547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 7714475 - 7714247
Alignment:
| Q |
1 |
aacaaccatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgac |
100 |
Q |
| |
|
||||||||| |||||||||| ||| ||||||| ||||| ||||||||| |||||||||||||||| || || |||| ||||| |||||| ||||| ||| |
|
|
| T |
7714475 |
aacaaccatgaagttcaactatggctggaaaatctcaaagatgctctttatgatgccgatgactttctcaattacttcaacacggaagacctgaggtgac |
7714376 |
T |
|
| Q |
101 |
aagtgatgaccaatcacaagaaggctaaaaaggttcgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaagga |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
7714375 |
aagtgatgaccaatcacaagaaagctaaaaaggtttgcatcttcttctcatcatccaaccaacttctcttttctttcaaaatggttcagaaaattaagga |
7714276 |
T |
|
| Q |
201 |
acttagtaagagaattaaggaccttaatg |
229 |
Q |
| |
|
||| |||||||||||| |||||||||||| |
|
|
| T |
7714275 |
actaagtaagagaattgaggaccttaatg |
7714247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 16750769 - 16750552
Alignment:
| Q |
17 |
aactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgacaagtgatgaccaatca |
116 |
Q |
| |
|
|||| ||| |||| |||||||| ||| ||||||||||||| ||||||||||||||||| || || ||||||||| ||| ||||| |||| || | |
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|
| T |
16750769 |
aactatgggtggagaagctcaaagatactcttgatgatgctgatgacttgcttgatgatgtttttactgaagacttgtagcgtcaagtactgacaaaaga |
16750670 |
T |
|
| Q |
117 |
caagaaggctaaaaaggttcgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaacttagtaagagaatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || |||||||||||||||||||| | || |||| ||||||||||||| ||||||| ||| ||||| |
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|
| T |
16750669 |
caagaaggctaaaaaggttcgcatcttcttatcctcttccaaccagcttctcttttcgtttaacatggctcagaaaattaagaaacttaggaagcgaatt |
16750570 |
T |
|
| Q |
217 |
aaggaccttaatgttgat |
234 |
Q |
| |
|
||| ||||| |||||| |
|
|
| T |
16750569 |
gagggtcttaacgttgat |
16750552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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