View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3727_low_14 (Length: 236)
Name: NF3727_low_14
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3727_low_14 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 78201 - 78420
Alignment:
| Q |
1 |
atcatgttgtttgaaaatgttattatgttttatgtgcctcttttctcattgcttcaaattactactaattcctaaacaactttcatggctttctttcaca |
100 |
Q |
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| T |
78201 |
atcatgttgtttgaaaatgttattatgtgttatgtgcctcttttctcattgcttcaaattactactaattcctaaacaactttcatggctttctttcaca |
78300 |
T |
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| Q |
101 |
cattccaatgtttatgattaataaggaagaacaaacaacccttcaaagcttacttgataatgaataatgaaagtgaccttaccttaccttatcctttaaa |
200 |
Q |
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| T |
78301 |
cattccaatgtttatgattaataaggaagaacaaacaacccttcaaagcttactt-ataatgaataatgatagtgaccttaccttaccttatcctttaaa |
78399 |
T |
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| Q |
201 |
atataaaatattggactgaaa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
78400 |
atataaaatattggactgaaa |
78420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 40888083 - 40887864
Alignment:
| Q |
1 |
atcatgttgtttgaaaatgttattatgttttatgtgcctcttttctcattgcttcaaattactactaattcctaaacaactttcatggctttctttcaca |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40888083 |
atcatgttgtttgaaaatgttattatgtgttatgtgcctcttttctcattgcttcaaattactactaattcctaaacaactttcatggctttctttcaca |
40887984 |
T |
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| Q |
101 |
cattccaatgtttatgattaataaggaagaacaaacaacccttcaaagcttacttgataatgaataatgaaagtgaccttaccttaccttatcctttaaa |
200 |
Q |
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| T |
40887983 |
cattccaatgtttatgattaataaggaagaacaaacaacccttcaaagcttactt-ataatgaataatgatagtgaccttaccttaccttatcctttaaa |
40887885 |
T |
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| Q |
201 |
atataaaatattggactgaaa |
221 |
Q |
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| T |
40887884 |
atataaaatattggactgaaa |
40887864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 39 - 221
Target Start/End: Original strand, 14905034 - 14905214
Alignment:
| Q |
39 |
tcttttctcattgcttcaaattactactaattcctaaacaactttcatggctttctttcacacattccaatgtttat--gattaataaggaagaacaaac |
136 |
Q |
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| T |
14905034 |
tcttttctcattgcttcaat---ctactaattcctaaacaactgtcatggctttctttcatacgttccaatgtttatatgattaataaggaagaacaa-- |
14905128 |
T |
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| Q |
137 |
aacccttcaaagcttacttgata---atgaataatgaaagtgaccttaccttaccttatcctttaaaatataaaatattggactgaaa |
221 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14905129 |
--cccttcaaagcttacttgatactaatgaataatgatagtgaccttaccttaccttatcccttaaaatataaaatattggactgaaa |
14905214 |
T |
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