View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3727_low_2 (Length: 598)

Name: NF3727_low_2
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3727_low_2
NF3727_low_2
[»] chr8 (9 HSPs)
chr8 (113-287)||(33762889-33763073)
chr8 (528-569)||(11584104-11584145)
chr8 (528-569)||(45253630-45253671)
chr8 (528-572)||(999277-999321)
chr8 (531-578)||(37663705-37663752)
chr8 (528-566)||(42786685-42786723)
chr8 (528-565)||(1248261-1248298)
chr8 (19-50)||(33763136-33763167)
chr8 (528-560)||(39359744-39359776)
[»] chr4 (2 HSPs)
chr4 (528-578)||(8810579-8810629)
chr4 (324-383)||(11148087-11148146)
[»] chr1 (2 HSPs)
chr1 (528-578)||(35848420-35848470)
chr1 (357-455)||(5158770-5158868)
[»] chr6 (2 HSPs)
chr6 (528-572)||(20545509-20545553)
chr6 (261-306)||(30709515-30709560)
[»] chr7 (3 HSPs)
chr7 (355-462)||(20573537-20573644)
chr7 (528-578)||(24680982-24681032)
chr7 (486-524)||(25143533-25143571)
[»] chr3 (6 HSPs)
chr3 (528-578)||(5393847-5393897)
chr3 (528-578)||(23377990-23378040)
chr3 (261-307)||(31799494-31799540)
chr3 (528-566)||(45186577-45186615)
chr3 (485-525)||(21268010-21268050)
chr3 (528-572)||(48309849-48309893)
[»] chr2 (6 HSPs)
chr2 (529-578)||(44996554-44996603)
chr2 (528-559)||(14871648-14871679)
chr2 (528-559)||(14876714-14876745)
chr2 (261-306)||(45114959-45115004)
chr2 (488-528)||(4409061-4409101)
chr2 (528-572)||(28508487-28508531)
[»] scaffold0003 (1 HSPs)
scaffold0003 (528-578)||(324050-324100)
[»] chr5 (3 HSPs)
chr5 (528-578)||(8009911-8009961)
chr5 (262-307)||(7491273-7491318)
chr5 (261-306)||(36429306-36429351)
[»] scaffold0020 (1 HSPs)
scaffold0020 (488-525)||(8991-9028)


Alignment Details
Target: chr8 (Bit Score: 129; Significance: 2e-66; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 113 - 287
Target Start/End: Complemental strand, 33763073 - 33762889
Alignment:
Q  113 cagatgactagaatattacctgtgaataaatgag---------atttgaattgacctctacatattgcattacaatgtctctactaattgatttatgttt 203  Q
    ||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||    
T  33763073 cagatgactagaatattacctgtgaataaatgaggtgtctgaaatttgaattgacctctacatattgcattacaatatctctatcaattgatttatgttt 33762974  T
Q  204 acggagac-atgtagaaatttatttgtttatagagtaaataggaagaaaataaactccgaaattatatctttcgtcaaaaatccc 287  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33762973 acggagaccatgtataaatttatttgtttatagagtaaataggaagaaaataaactccgaaattatatctttcgtcaaaaatccc 33762889  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 528 - 569
Target Start/End: Original strand, 11584104 - 11584145
Alignment:
Q  528 atatttgtacaaccattttcttacaatttttgggacaaccct 569  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  11584104 atatttgtacaaccattttcttacaatttttgagacaaccct 11584145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 528 - 569
Target Start/End: Complemental strand, 45253671 - 45253630
Alignment:
Q  528 atatttgtacaaccattttcttacaatttttgggacaaccct 569  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  45253671 atatttgtacaaccattttcttacaacttttgggacaaccct 45253630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 528 - 572
Target Start/End: Complemental strand, 999321 - 999277
Alignment:
Q  528 atatttgtacaaccattttcttacaatttttgggacaaccctctc 572  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||    
T  999321 atatttgtacaaccattttcttataatttttgggactaccctctc 999277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 531 - 578
Target Start/End: Complemental strand, 37663752 - 37663705
Alignment:
Q  531 tttgtacaaccattttcttacaatttttgggacaaccctctcactcat 578  Q
    |||||||||||||||| ||||||||||| ||||||||||||| |||||    
T  37663752 tttgtacaaccattttgttacaatttttaggacaaccctctctctcat 37663705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 528 - 566
Target Start/End: Complemental strand, 42786723 - 42786685
Alignment:
Q  528 atatttgtacaaccattttcttacaatttttgggacaac 566  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  42786723 atatttgtacaaccattttcttacaatttttgtgacaac 42786685  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 528 - 565
Target Start/End: Original strand, 1248261 - 1248298
Alignment:
Q  528 atatttgtacaaccattttcttacaatttttgggacaa 565  Q
    |||||||||||||||||||||||||| |||||||||||    
T  1248261 atatttgtacaaccattttcttacaacttttgggacaa 1248298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 33763167 - 33763136
Alignment:
Q  19 aatgaacatgtgaatttgacaaggaaaggaac 50  Q
    ||||||||||||||||||||||||||||||||    
T  33763167 aatgaacatgtgaatttgacaaggaaaggaac 33763136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 560
Target Start/End: Original strand, 39359744 - 39359776
Alignment:
Q  528 atatttgtacaaccattttcttacaatttttgg 560  Q
    ||||||||||||||||||||| |||||||||||    
T  39359744 atatttgtacaaccattttctgacaatttttgg 39359776  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 528 - 578
Target Start/End: Original strand, 8810579 - 8810629
Alignment:
Q  528 atatttgtacaaccattttcttacaatttttgggacaaccctctcactcat 578  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  8810579 atatttgtacaaccattttcttacaacttttgggacaaccctctctctcat 8810629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 383
Target Start/End: Complemental strand, 11148146 - 11148087
Alignment:
Q  324 aattgccaaatattagtcaattacccaatcggtttgttttggttgttaacccttatgatg 383  Q
    ||||| ||||| ||||||||||||||  || |||||||||||||||||| || |||||||    
T  11148146 aattgtcaaatgttagtcaattaccccctccgtttgttttggttgttaaaccatatgatg 11148087  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 528 - 578
Target Start/End: Original strand, 35848420 - 35848470
Alignment:
Q  528 atatttgtacaaccattttcttacaatttttgggacaaccctctcactcat 578  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  35848420 atatttgtacaaccattttcttataatttttgggacaaccctctctctcat 35848470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 455
Target Start/End: Original strand, 5158770 - 5158868
Alignment:
Q  357 ttgttttggttgttaacccttatgatgtgacaatcaactgtatacgtaggaccttcacgtggactaaatgttatgtcacgtcacacggggtaattgact 455  Q
    |||||||||||||||| |||||||| ||| || | ||||||  | ||   |||| |||||||||| || ||||||||||||||||  || |||||||||    
T  5158770 ttgttttggttgttaatccttatgacgtggcagttaactgttcatgtgacacctccacgtggactgaacgttatgtcacgtcacagtggataattgact 5158868  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 528 - 572
Target Start/End: Original strand, 20545509 - 20545553
Alignment:
Q  528 atatttgtacaaccattttcttacaatttttgggacaaccctctc 572  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  20545509 atatttgtacaaccattttcttaccatttttgggacaaccctctc 20545553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 30709515 - 30709560
Alignment:
Q  261 gaaattatatctttcgtcaaaaatccccgtgacttttaagaaactt 306  Q
    |||||| || |||||||||||||||||| ||| |||||||||||||    
T  30709515 gaaattgtaactttcgtcaaaaatccccctgatttttaagaaactt 30709560  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 462
Target Start/End: Original strand, 20573537 - 20573644
Alignment:
Q  355 gtttgttttggttgttaacccttatgatgtgacaatcaactgtatacgtaggaccttcacgtggactaaatgttatgtcacgtcacacggggtaattgac 454  Q
    |||||||||  |||||||||| |||||||||||||  ||||||||||||   |||| |||||| ||| || |||||  ||||||||| ||||||||| |     
T  20573537 gtttgttttccttgttaacccgtatgatgtgacaagtaactgtatacgtgacacctccacgtgaactgaacgttataccacgtcacagggggtaattaat 20573636  T
Q  455 tatttttt 462  Q
    ||||||||    
T  20573637 tatttttt 20573644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 528 - 578
Target Start/End: Complemental strand, 24681032 - 24680982
Alignment:
Q  528 atatttgtacaaccattttcttacaatttttgggacaaccctctcactcat 578  Q
    ||||||||| ||||||||||||| || ||||||||||| |||||| |||||    
T  24681032 atatttgtataaccattttcttataacttttgggacaatcctctctctcat 24680982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 524
Target Start/End: Original strand, 25143533 - 25143571
Alignment:
Q  486 tctaaaatctatgtgattataaaaataaacaaatacccc 524  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  25143533 tctaaaatctgtgtgattataaaaatagacaaatacccc 25143571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 528 - 578
Target Start/End: Complemental strand, 5393897 - 5393847
Alignment:
Q  528 atatttgtacaaccattttcttacaatttttgggacaaccctctcactcat 578  Q
    |||||||||||| ||||||||||||| |||||||||||||||||| |||||    
T  5393897 atatttgtacaatcattttcttacaacttttgggacaaccctctctctcat 5393847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 528 - 578
Target Start/End: Original strand, 23377990 - 23378040
Alignment:
Q  528 atatttgtacaaccattttcttacaatttttgggacaaccctctcactcat 578  Q
    |||||||| ||||||||||||||||| ||||| |||||||||||| |||||    
T  23377990 atatttgtgcaaccattttcttacaacttttgagacaaccctctctctcat 23378040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 307
Target Start/End: Original strand, 31799494 - 31799540
Alignment:
Q  261 gaaattatatctttcgtcaaaaatccccgtgacttttaagaaactta 307  Q
    ||||||||| ||||||||||||| | || ||||||||||||||||||    
T  31799494 gaaattataactttcgtcaaaaaactccctgacttttaagaaactta 31799540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 528 - 566
Target Start/End: Complemental strand, 45186615 - 45186577
Alignment:
Q  528 atatttgtacaaccattttcttacaatttttgggacaac 566  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  45186615 atatttgtacaaccattttctaacaatttttgtgacaac 45186577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 525
Target Start/End: Original strand, 21268010 - 21268050
Alignment:
Q  485 gtctaaaatctatgtgattataaaaataaacaaataccccc 525  Q
    |||||||||||||| ||||||||||| | ||||||||||||    
T  21268010 gtctaaaatctatgggattataaaaacagacaaataccccc 21268050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 572
Target Start/End: Original strand, 48309849 - 48309893
Alignment:
Q  528 atatttgtacaaccattttcttacaatttttgggacaaccctctc 572  Q
    ||||||||||||  ||||||||| |||||||||||||||| ||||    
T  48309849 atatttgtacaataattttcttataatttttgggacaaccatctc 48309893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 529 - 578
Target Start/End: Original strand, 44996554 - 44996603
Alignment:
Q  529 tatttgtacaaccattttcttacaatttttgggacaaccctctcactcat 578  Q
    ||||||||||||||||||||||||| ||||||||||||||| || |||||    
T  44996554 tatttgtacaaccattttcttacaacttttgggacaaccctttctctcat 44996603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 528 - 559
Target Start/End: Original strand, 14871648 - 14871679
Alignment:
Q  528 atatttgtacaaccattttcttacaatttttg 559  Q
    ||||||||||||||||||||||||||||||||    
T  14871648 atatttgtacaaccattttcttacaatttttg 14871679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 528 - 559
Target Start/End: Original strand, 14876714 - 14876745
Alignment:
Q  528 atatttgtacaaccattttcttacaatttttg 559  Q
    ||||||||||||||||||||||||||||||||    
T  14876714 atatttgtacaaccattttcttacaatttttg 14876745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 45115004 - 45114959
Alignment:
Q  261 gaaattatatctttcgtcaaaaatccccgtgacttttaagaaactt 306  Q
    |||||| || ||||||||||||| |||| |||||||||||||||||    
T  45115004 gaaattgtaactttcgtcaaaaacccccttgacttttaagaaactt 45114959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 528
Target Start/End: Original strand, 4409061 - 4409101
Alignment:
Q  488 taaaatctatgtgattataaaaataaacaaataccccctca 528  Q
    |||||||||||||||| |||||||| ||||||||| |||||    
T  4409061 taaaatctatgtgattgtaaaaatagacaaataccacctca 4409101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 572
Target Start/End: Original strand, 28508487 - 28508531
Alignment:
Q  528 atatttgtacaaccattttcttacaatttttgggacaaccctctc 572  Q
    ||||||||||||||||||| | |||| ||||||||||||| ||||    
T  28508487 atatttgtacaaccattttgtgacaacttttgggacaaccttctc 28508531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 528 - 578
Target Start/End: Original strand, 324050 - 324100
Alignment:
Q  528 atatttgtacaaccattttcttacaatttttgggacaaccctctcactcat 578  Q
    ||||||||| ||||||||||||| |||||||||||||| |||||| |||||    
T  324050 atatttgtagaaccattttcttataatttttgggacaatcctctctctcat 324100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 528 - 578
Target Start/End: Original strand, 8009911 - 8009961
Alignment:
Q  528 atatttgtacaaccattttcttacaatttttgggacaaccctctcactcat 578  Q
    |||||| ||||||||||||||||||| |||||||| |||| |||| |||||    
T  8009911 atatttatacaaccattttcttacaacttttgggataaccttctctctcat 8009961  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 7491273 - 7491318
Alignment:
Q  262 aaattatatctttcgtcaaaaatccccgtgacttttaagaaactta 307  Q
    ||||| || ||||||||||||||| || ||||||||||||||||||    
T  7491273 aaattgtaactttcgtcaaaaatcaccctgacttttaagaaactta 7491318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 36429306 - 36429351
Alignment:
Q  261 gaaattatatctttcgtcaaaaatccccgtgacttttaagaaactt 306  Q
    |||||| || |||||||||||||||||| ||| |||||||||||||    
T  36429306 gaaattgtaactttcgtcaaaaatccccctgatttttaagaaactt 36429351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 525
Target Start/End: Complemental strand, 9028 - 8991
Alignment:
Q  488 taaaatctatgtgattataaaaataaacaaataccccc 525  Q
    |||||||||||||||||||||||||  |||||||||||    
T  9028 taaaatctatgtgattataaaaataggcaaataccccc 8991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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