View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3727_low_3 (Length: 562)

Name: NF3727_low_3
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3727_low_3
NF3727_low_3
[»] chr5 (2 HSPs)
chr5 (19-443)||(4947656-4948104)
chr5 (504-546)||(4947553-4947595)


Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 19 - 443
Target Start/End: Complemental strand, 4948104 - 4947656
Alignment:
Q  19 gtagcatctcccaacacagaagctttgtccatctgcacataccataatattgaatacattaattcaatgcttagtacaatataaatattgcaattgatat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4948104 gtagcatctcccaacacagaagctttgtccatctgcacataccataatattgaatacattaattcaatgcttagtacaatataaatattgcaattgatat 4948005  T
Q  119 tcaggtttaacttatctaggttaagcttgcatgtgtgtgtttattcactaattagtaaaattagttgcacccagtgtaagtagaacatta---------- 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  4948004 tcaggtttaacttatctaggttaagcttgcatgtgtgtgtttattcactaattagtaaaattagttgcacccagtgtaagtagaacattactcacaaaca 4947905  T
Q  209 ---ctcacaactataaaatttaaattatnnnnnnnnttagatacc-----------taatttgatcatagaaaatgatcaataaaaacaatttttagttt 294  Q
       |||||||||||||||||||||||||        || ||| ||           ||||||||||||||||||||||||||||||||||||||||||||    
T  4947904 ttactcacaactataaaatttaaattataaattttttttgatcccgagttgatccctaatttgatcatagaaaatgatcaataaaaacaatttttagttt 4947805  T
Q  295 ctgagtaaagaaaatggaacaatttaatcccgagnnnnnnnatgtctactctttgggtccgagaaataaaagctgtcctatttcttttctcgaagactaa 394  Q
    ||||| ||||||||||||||||||||||||| ||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4947804 ctgagaaaagaaaatggaacaatttaatccctagtttttttatgtctattctttgggtccgagaaataaaagctgtcctatttcttttctcgaagactaa 4947705  T
Q  395 attcgatttgattttcttatgaacagattaggttatactgtttttctca 443  Q
    |||  |||| |||||||||||||||||||||||||||||||||||||||    
T  4947704 attttattttattttcttatgaacagattaggttatactgtttttctca 4947656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 504 - 546
Target Start/End: Complemental strand, 4947595 - 4947553
Alignment:
Q  504 ggtcactaatattgccagggacaagagaattagagagatcaca 546  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  4947595 ggtcactaatattgctagggacaagagaattagagagatcaca 4947553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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