View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3727_low_6 (Length: 397)

Name: NF3727_low_6
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3727_low_6
NF3727_low_6
[»] chr8 (6 HSPs)
chr8 (182-387)||(13844813-13845018)
chr8 (1-109)||(13844632-13844740)
chr8 (1-32)||(31236613-31236644)
chr8 (1-35)||(27213536-27213570)
chr8 (1-38)||(34897071-34897108)
chr8 (1-38)||(39954315-39954352)
[»] chr1 (8 HSPs)
chr1 (1-43)||(3490426-3490468)
chr1 (1-37)||(19562657-19562693)
chr1 (1-40)||(17831567-17831606)
chr1 (1-44)||(21530669-21530712)
chr1 (5-43)||(38076010-38076048)
chr1 (1-38)||(2896157-2896194)
chr1 (1-38)||(36878447-36878484)
chr1 (1-37)||(1262871-1262907)
[»] chr6 (5 HSPs)
chr6 (1-43)||(3209362-3209404)
chr6 (1-38)||(677823-677860)
chr6 (1-38)||(7996414-7996451)
chr6 (1-38)||(8022350-8022387)
chr6 (1-37)||(26562676-26562712)
[»] chr7 (3 HSPs)
chr7 (1-42)||(5475754-5475795)
chr7 (1-43)||(45056937-45056979)
chr7 (1-38)||(32308106-32308143)
[»] chr3 (6 HSPs)
chr3 (1-58)||(40052298-40052355)
chr3 (1-43)||(14747542-14747584)
chr3 (1-43)||(21479099-21479141)
chr3 (1-58)||(1438770-1438827)
chr3 (1-38)||(8039192-8039229)
chr3 (3-58)||(37077323-37077379)
[»] chr2 (8 HSPs)
chr2 (1-37)||(21782854-21782890)
chr2 (1-31)||(31284041-31284071)
chr2 (1-43)||(38117195-38117237)
chr2 (1-38)||(21616748-21616785)
chr2 (6-43)||(26769492-26769529)
chr2 (1-38)||(27084248-27084285)
chr2 (1-37)||(896198-896234)
chr2 (6-38)||(22550283-22550315)
[»] scaffold0697 (1 HSPs)
scaffold0697 (1-44)||(1624-1667)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-43)||(71704-71746)
[»] chr5 (6 HSPs)
chr5 (1-58)||(14674234-14674292)
chr5 (1-43)||(31084304-31084346)
chr5 (2-58)||(6035448-6035505)
chr5 (2-43)||(11685920-11685961)
chr5 (1-38)||(39205866-39205903)
chr5 (7-43)||(2436903-2436939)
[»] chr4 (5 HSPs)
chr4 (1-43)||(15835675-15835717)
chr4 (1-43)||(35723421-35723463)
chr4 (6-43)||(15029746-15029783)
chr4 (1-38)||(17345451-17345488)
chr4 (6-42)||(50280863-50280899)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-38)||(92793-92830)


Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 182 - 387
Target Start/End: Original strand, 13844813 - 13845018
Alignment:
Q  182 tttggttcaaaggaaaaagccgtgaaaggatgccagggaaaccagaaactgatgattggagaataaagcaaagtgagcaggttcagttgccatcttccat 281  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  13844813 tttggttcaaaggaaaaagctgtgaaaggatgccagggaaaccagaaactgatgattggagaatagagcatagtgagcaggttcagttgccatcttccat 13844912  T
Q  282 ttactctcatcatcagccttggtggcttgaaaatggctccaaaccatcttcagctgatcagctaaatggttcaatcatgaatgatgtcacacattcagag 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13844913 ttactctcatcatcagccttggtggcttgaaaatggctccaaaccatcttcagctgatcagctaaatggttcaatcatgaatgatgtcacacattcagag 13845012  T
Q  382 cctttg 387  Q
    ||||||    
T  13845013 cctttg 13845018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 13844632 - 13844740
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtctttattcgtgcttcacagagctcaagtgtttttgagcttatctgagtaagggtaaat 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13844632 ttttctcaaattattagcagtgtcggcgtgtccgtgtcgtgtctgtattcgtgcttcacagagctcaagtgtttttgagcttatctgagtaagggtaaat 13844731  T
Q  101 gttcaaaca 109  Q
    |||||||||    
T  13844732 gttcaaaca 13844740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 31236613 - 31236644
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtc 32  Q
    ||||||||||||||||||||||||||||||||    
T  31236613 ttttctcaaattattagcagtgtcggcgtgtc 31236644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 27213570 - 27213536
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgt 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  27213570 ttttctgaaattattagcagtgtcggcgtgtctgt 27213536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34897108 - 34897071
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  34897108 ttttctcaaattattagcggtgtcgacgtgtctgtgtc 34897071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 39954315 - 39954352
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  39954315 ttttctcaaattattagcggtgtcggcgtgtcggtgtc 39954352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3490426 - 3490468
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  3490426 ttttctcaaattattagcagtgtcggcgtgtcagtgtcgtgtc 3490468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19562657 - 19562693
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgt 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  19562657 ttttctcaaattattagcagtgtcggcgtgtcagtgt 19562693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 17831567 - 17831606
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgt 40  Q
    |||||||||||||||||| ||||||||||||| |||||||    
T  17831567 ttttctcaaattattagcggtgtcggcgtgtcagtgtcgt 17831606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 21530712 - 21530669
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtct 44  Q
    |||||||||||||||| | ||||||||||||||||||| |||||    
T  21530712 ttttctcaaattattaacggtgtcggcgtgtctgtgtcatgtct 21530669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 38076010 - 38076048
Alignment:
Q  5 ctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  38076010 ctcaaattattagcagtgtcgtcgtgtccgtgtcgtgtc 38076048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2896157 - 2896194
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  2896157 ttttctcaaattattagcggtgtcggcgtgtcagtgtc 2896194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36878484 - 36878447
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  36878484 ttttctcaaattattagcggtgtcggcgtgtcagtgtc 36878447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1262907 - 1262871
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgt 37  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  1262907 ttttctcaaattattagctgtgtcggcgtgtccgtgt 1262871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 3209404 - 3209362
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    |||| ||||||||||||| ||||||||||||||||||||||||    
T  3209404 ttttttcaaattattagctgtgtcggcgtgtctgtgtcgtgtc 3209362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 677860 - 677823
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  677860 ttttctcaaattattaacagtgtcggcgtgtcagtgtc 677823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7996414 - 7996451
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  7996414 ttttctcaaattattagcagtgtcggcatgtcagtgtc 7996451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8022387 - 8022350
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  8022387 ttttctcaaattattagcagtgtcggcatgtcagtgtc 8022350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26562712 - 26562676
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgt 37  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  26562712 ttttctcaaatttttagcagtgtcggcgtgtccgtgt 26562676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5475754 - 5475795
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgt 42  Q
    |||||||||||||||||||| |||||||| ||||||||||||    
T  5475754 ttttctcaaattattagcagcgtcggcgtatctgtgtcgtgt 5475795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 45056937 - 45056979
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    ||||||||||||||||||||||| || ||||| ||||||||||    
T  45056937 ttttctcaaattattagcagtgttggagtgtccgtgtcgtgtc 45056979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32308143 - 32308106
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  32308143 ttttctcaaattattagcggtgtcggcgtgtcagtgtc 32308106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 40052355 - 40052298
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtctttattcgtgcttca 58  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||  ||| |||||||||    
T  40052355 ttttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtccgtatccgtgcttca 40052298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 14747584 - 14747542
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||    
T  14747584 ttttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtc 14747542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 21479141 - 21479099
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||    
T  21479141 ttttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtc 21479099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 1438827 - 1438770
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtctttattcgtgcttca 58  Q
    |||||||||||| |||||  |||||| ||||| ||||||||||  |||||||||||||    
T  1438827 ttttctcaaattgttagcgatgtcggtgtgtcagtgtcgtgtccatattcgtgcttca 1438770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8039229 - 8039192
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    |||||||||||||| | |||||||||||||||||||||    
T  8039229 ttttctcaaattatcatcagtgtcggcgtgtctgtgtc 8039192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 37077379 - 37077323
Alignment:
Q  3 ttctcaaattattagcagtgtcggcgtgtctgtgt-cgtgtctttattcgtgcttca 58  Q
    |||||||||||||| | |||||||||||||  ||| ||||||||||| |||||||||    
T  37077379 ttctcaaattattatcggtgtcggcgtgtcactgtccgtgtctttatccgtgcttca 37077323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21782854 - 21782890
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgt 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  21782854 ttttctcaaattattagcagtgtcggcgtgtcagtgt 21782890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 31284071 - 31284041
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgt 31  Q
    |||||||||||||||||||||||||||||||    
T  31284071 ttttctcaaattattagcagtgtcggcgtgt 31284041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 38117195 - 38117237
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||    
T  38117195 ttttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtc 38117237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21616785 - 21616748
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  21616785 ttttctcaaattattagcggtgtcggcgtgtccgtgtc 21616748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 26769529 - 26769492
Alignment:
Q  6 tcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  26769529 tcaaattattagttgtgtcggcgtgtctgtgtcgtgtc 26769492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27084285 - 27084248
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  27084285 ttttctcaaattattagcagtgtcggagtgtccgtgtc 27084248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 896234 - 896198
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgt 37  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  896234 ttttctcaaactattagcagtgtcggcgtgtcagtgt 896198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 22550283 - 22550315
Alignment:
Q  6 tcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    ||||||||||||||||||||||||||| |||||    
T  22550283 tcaaattattagcagtgtcggcgtgtccgtgtc 22550315  T

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Target: scaffold0697 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 1667 - 1624
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtct 44  Q
    |||||||||||||||| | ||||||||||||||||||| |||||    
T  1667 ttttctcaaattattaacggtgtcggcgtgtctgtgtcatgtct 1624  T

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Target: scaffold0019 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 71746 - 71704
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||    
T  71746 ttttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtc 71704  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 14674292 - 14674234
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgt-cgtgtctttattcgtgcttca 58  Q
    |||| ||||||||||||| ||||||||||||| |||| ||||||| ||| |||||||||    
T  14674292 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtctgtatccgtgcttca 14674234  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31084346 - 31084304
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||    
T  31084346 ttttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtc 31084304  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 6035505 - 6035448
Alignment:
Q  2 tttctcaaattattagcagtgtcggcgtgtctgtgtc-gtgtctttattcgtgcttca 58  Q
    ||||||||||||||||| ||||||||||||| |||||  ||||| ||| |||||||||    
T  6035505 tttctcaaattattagcggtgtcggcgtgtcagtgtctttgtctatatccgtgcttca 6035448  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 11685961 - 11685920
Alignment:
Q  2 tttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    ||||||||||||||||| |||||||| |||| ||||||||||    
T  11685961 tttctcaaattattagcggtgtcggcatgtcagtgtcgtgtc 11685920  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39205903 - 39205866
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  39205903 ttttctcaaattattagcagtgtcgacgtgtccgtgtc 39205866  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 2436939 - 2436903
Alignment:
Q  7 caaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  2436939 caaattattagcggtgtcggcgtgtcagtgtcgtgtc 2436903  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 15835675 - 15835717
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    |||| ||||||||||| ||||||||| ||||||||||||||||    
T  15835675 ttttttcaaattattaacagtgtcggtgtgtctgtgtcgtgtc 15835717  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 35723421 - 35723463
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    |||||||||||||||||| ||||||||||||| ||||| ||||    
T  35723421 ttttctcaaattattagcggtgtcggcgtgtcagtgtcatgtc 35723463  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 15029783 - 15029746
Alignment:
Q  6 tcaaattattagcagtgtcggcgtgtctgtgtcgtgtc 43  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  15029783 tcaaattattagcagtgtctgcgtgtcagtgtcgtgtc 15029746  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17345451 - 17345488
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  17345451 ttttctcaaattattagcggtgtcggcgtgtcagtgtc 17345488  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 50280899 - 50280863
Alignment:
Q  6 tcaaattattagcagtgtcggcgtgtctgtgtcgtgt 42  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  50280899 tcaaattattagctgtgtcggcgtgtccgtgtcgtgt 50280863  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 92830 - 92793
Alignment:
Q  1 ttttctcaaattattagcagtgtcggcgtgtctgtgtc 38  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  92830 ttttctcaaattattagcggtgtcggcgtgtcagtgtc 92793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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