View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3727_low_7 (Length: 382)
Name: NF3727_low_7
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3727_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 33172956 - 33173157
Alignment:
| Q |
18 |
cataccacatatattcatttaatccttcttctcaacaaaatccacactttgcttcataattaaaattgaaagagttcgatttgttttgcgtcaagaaaag |
117 |
Q |
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| T |
33172956 |
cataccacatatactcatttaatccttcttctcaacaaaatccacactttgcttcataattaaaattgaaaaagttcgatttattttgcgtcgagaaaag |
33173055 |
T |
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| Q |
118 |
ctaatcg--tagtgctcatatatttttgcccaatgtggcactcaacaccttatttgaagcctgttgtaatatatgacgatggtgttgttaaattagcttc |
215 |
Q |
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| T |
33173056 |
ctaatcgtatagtgctcatatgtttttgcccaatgtggcactcaacaccttatttgcagcctgttgtaatatatgacgatggtgttgttaaattagcttc |
33173155 |
T |
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| Q |
216 |
tt |
217 |
Q |
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|| |
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| T |
33173156 |
tt |
33173157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 227 - 372
Target Start/End: Original strand, 33173182 - 33173327
Alignment:
| Q |
227 |
gcttacaacaagagttcaaatcacatttccaattttcaacaaagcatcaaactgaatannnnnnnaactgtatcaaaccgaatcactaatatctacaata |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33173182 |
gcttacaacaagagttcaaatcacatttccaattttcaacaaagcatcaaactgaatatttttttaactgtatcaaaccgaatcactaatatctacaata |
33173281 |
T |
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| Q |
327 |
ttcatcaaacttatttaacactaaaaacatcacgagctagcctttg |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33173282 |
ttcatcaaacttatttaacactaaaaacatcacgagctagcctttg |
33173327 |
T |
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