View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3727_low_9 (Length: 340)
Name: NF3727_low_9
Description: NF3727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3727_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 34140795 - 34141051
Alignment:
| Q |
18 |
gaggaagcatctgggatcctgccaagtgccaacccaaccaaccgagaatcaaccctaggttgtagcttgagttacaccctcgaccgagatgcttgcacgc |
117 |
Q |
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| T |
34140795 |
gaggaagcatctcggattctgccaagtgccaacccagccaaccgagaatcaaccctaggttgtagcttgagttacaccctcgaccgagatgcttgcacac |
34140894 |
T |
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| Q |
118 |
tgcacacgggcgaataatctcttttgccataactgcacattaaattaggaaattcaattactcggttcatttaacaacaacaatttataacacacaaaat |
217 |
Q |
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| T |
34140895 |
tgcacacaggcgaataatctcttttgccataactgcacattaaattaggaaattcaattactcggttcatttaacaacaacaatttataacacacaaaat |
34140994 |
T |
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| Q |
218 |
gcaaatacaatatctattgttatcaaaatgatagatatgattcatgatagttattcaa |
275 |
Q |
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| T |
34140995 |
gcaaaaacaatatc-attgttatcaaaatgatagatatgattcatgatagttattcaa |
34141051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 34134509 - 34134602
Alignment:
| Q |
105 |
gatgcttgcacgctgcacacgggcgaataatctcttttgccataactgcacattaaat-taggaaattcaattactcggttcatttaacaacaa |
197 |
Q |
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| T |
34134509 |
gatgcttgcacgctgcacacgggcgaataatctcttctgccataactgtaaattaaatataacaaattcaattactcagttcattcaacaacaa |
34134602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 103 - 207
Target Start/End: Original strand, 34155765 - 34155872
Alignment:
| Q |
103 |
gagatgcttgcacgctgcacacgggcgaataatctcttttgccataa---ctgcacattaaattaggaaattcaattactcggttcatttaacaacaaca |
199 |
Q |
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| T |
34155765 |
gagatgcttgcatgctgcgcacgggcgaataatctctcttgccattattactgcacattaaattaacaaattcaattaataagttcatttaacaacaaca |
34155864 |
T |
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| Q |
200 |
atttataa |
207 |
Q |
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| T |
34155865 |
atatataa |
34155872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 34145425 - 34145535
Alignment:
| Q |
103 |
gagatgcttgcacgctgcacacgggcgaataatctcttttgccataactgcacattaaattaggaaattcaattactcggttcatttaacaacaacaatt |
202 |
Q |
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|||||||||||| |||||||| ||||||||||||||| | |||| |||||||||||||||| ||||||||||| || |||||| || |||||| ||| |
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| T |
34145425 |
gagatgcttgcaagctgcacatgggcgaataatctctctatccattgctgcacattaaattagcaaattcaattattcatttcattcaagaacaacgatt |
34145524 |
T |
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| Q |
203 |
tataacacaca |
213 |
Q |
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|| |||||||| |
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| T |
34145525 |
taaaacacaca |
34145535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 327
Target Start/End: Complemental strand, 35311339 - 35311311
Alignment:
| Q |
299 |
aatataaataaggtttaaatatgtttttc |
327 |
Q |
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| T |
35311339 |
aatataaataaggtttaaatatgtttttc |
35311311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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