View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3728_high_11 (Length: 479)
Name: NF3728_high_11
Description: NF3728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3728_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 34563349 - 34563767
Alignment:
| Q |
1 |
taaacttaaataagtcgatccaaacagcccataaatatattcaattggaaaagaaaaacataattnnnnnnntgaatctacaggatt-aacataaaccaa |
99 |
Q |
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| T |
34563349 |
taaacttaaataagtcgatccaaacagcccataaatatattcaattggaaaagaaaaacataatttaaaaaatgaatctgcaggatttaacataaactaa |
34563448 |
T |
|
| Q |
100 |
aaacacatcgctgatcaattttacatcactgggacaagaatgtgtatattaaataactgtaaacaatatcatcatctaaaaggtaaaagactaataattt |
199 |
Q |
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| T |
34563449 |
aaacacatcgctgatcaattttacatcactgggacaagaatgtgtatattaaataactgtaaacaatatcatcatctaaaaggtaaaagactaataattt |
34563548 |
T |
|
| Q |
200 |
gacatcaaagaaagatccagctttcagaatgatcataaacacttatgatctcaacattagataatgaaatagaataacaaagtgatcaattctgataaga |
299 |
Q |
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| T |
34563549 |
gacatcaaagaaagatccagctttcagaatgatcataaacacttatgatctcagcattagataatgaaatagaataacaaagtgatcaattctgataaga |
34563648 |
T |
|
| Q |
300 |
tatat-----ataaatgttaggcctggttgtattaattgcaacgatagataaagttttcaggataacatcgatggataaataagcaagaaataaataaag |
394 |
Q |
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| T |
34563649 |
tatatactccataaatgttaggcctggttgtattaattgcaacgatagataaagttttcaggataacatcaatggataaataagcaagaaataaataaag |
34563748 |
T |
|
| Q |
395 |
gataattgtgatctatttt |
413 |
Q |
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| T |
34563749 |
gataattgtgatctatttt |
34563767 |
T |
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